Experiment: pH 9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0316 and PP_0317 are separated by 108 nucleotides PP_0317 and PP_0318 are separated by 266 nucleotides PP_0318 and PP_0319 overlap by 4 nucleotides PP_0319 and PP_0320 are separated by 182 nucleotides
PP_0316: PP_0316 - putative glycine-betaine dioxygenase subunit, at 379,704 to 380,810
_0316
PP_0317: PP_0317 - Methyl-accepting chemotaxis transducer, at 380,919 to 382,544
_0317
PP_0318: PP_0318 - conserved protein of unknown function, at 382,811 to 383,041
_0318
PP_0319: PP_0319 - conserved protein of unknown function, at 383,038 to 383,340
_0319
PP_0320: PP_0320 - Methyl-accepting chemotaxis transducer, at 383,523 to 385,460
_0320
Position (kb) 380
381
382
383 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 380.091 kb on + strand, within PP_0316 at 380.091 kb on + strand, within PP_0316 at 380.111 kb on + strand, within PP_0316 at 380.145 kb on + strand, within PP_0316 at 380.145 kb on + strand, within PP_0316 at 380.146 kb on - strand, within PP_0316 at 380.211 kb on + strand, within PP_0316 at 380.211 kb on + strand, within PP_0316 at 380.212 kb on - strand, within PP_0316 at 380.212 kb on - strand, within PP_0316 at 380.317 kb on - strand, within PP_0316 at 380.355 kb on + strand, within PP_0316 at 380.356 kb on - strand, within PP_0316 at 380.356 kb on - strand, within PP_0316 at 380.356 kb on - strand, within PP_0316 at 380.356 kb on - strand, within PP_0316 at 380.394 kb on + strand, within PP_0316 at 380.394 kb on + strand, within PP_0316 at 380.666 kb on + strand, within PP_0316 at 380.667 kb on - strand, within PP_0316 at 380.667 kb on - strand, within PP_0316 at 380.757 kb on + strand at 380.757 kb on + strand at 380.758 kb on - strand at 380.758 kb on - strand at 380.758 kb on - strand at 380.758 kb on - strand at 380.758 kb on - strand at 380.920 kb on + strand at 380.921 kb on - strand at 380.921 kb on - strand at 380.937 kb on + strand at 380.938 kb on - strand at 381.066 kb on + strand at 381.219 kb on + strand at 381.220 kb on - strand, within PP_0317 at 381.220 kb on - strand, within PP_0317 at 381.220 kb on - strand, within PP_0317 at 381.287 kb on + strand, within PP_0317 at 381.288 kb on - strand, within PP_0317 at 381.288 kb on - strand, within PP_0317 at 381.288 kb on - strand, within PP_0317 at 381.461 kb on + strand, within PP_0317 at 381.461 kb on + strand, within PP_0317 at 381.462 kb on - strand, within PP_0317 at 381.762 kb on - strand, within PP_0317 at 381.905 kb on + strand, within PP_0317 at 381.905 kb on + strand, within PP_0317 at 381.942 kb on + strand, within PP_0317 at 381.942 kb on + strand, within PP_0317 at 381.942 kb on + strand, within PP_0317 at 381.943 kb on - strand, within PP_0317 at 381.991 kb on + strand, within PP_0317 at 381.991 kb on + strand, within PP_0317 at 382.044 kb on + strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.045 kb on - strand, within PP_0317 at 382.172 kb on - strand, within PP_0317 at 382.241 kb on - strand, within PP_0317 at 382.287 kb on - strand, within PP_0317 at 382.356 kb on + strand, within PP_0317 at 382.357 kb on - strand, within PP_0317 at 382.439 kb on + strand at 382.440 kb on - strand at 382.440 kb on - strand at 382.440 kb on - strand at 382.464 kb on - strand at 382.464 kb on - strand at 382.523 kb on + strand at 382.704 kb on - strand at 382.732 kb on + strand at 382.733 kb on - strand at 382.747 kb on + strand at 382.747 kb on + strand at 382.756 kb on + strand at 382.804 kb on + strand at 382.805 kb on - strand at 383.223 kb on + strand, within PP_0319 at 383.224 kb on - strand, within PP_0319 at 383.338 kb on + strand at 383.339 kb on - strand at 383.463 kb on + strand at 383.502 kb on + strand at 383.503 kb on - strand at 383.503 kb on - strand at 383.516 kb on + strand at 383.516 kb on + strand at 383.516 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.528 kb on + strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.529 kb on - strand at 383.537 kb on + strand at 383.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 9 remove 380,091 + PP_0316 0.35 -0.2 380,091 + PP_0316 0.35 -0.3 380,111 + PP_0316 0.37 -0.0 380,145 + PP_0316 0.40 -2.7 380,145 + PP_0316 0.40 +0.2 380,146 - PP_0316 0.40 -0.6 380,211 + PP_0316 0.46 +0.8 380,211 + PP_0316 0.46 -1.7 380,212 - PP_0316 0.46 +1.6 380,212 - PP_0316 0.46 +3.0 380,317 - PP_0316 0.55 -0.9 380,355 + PP_0316 0.59 -1.1 380,356 - PP_0316 0.59 +0.4 380,356 - PP_0316 0.59 -4.6 380,356 - PP_0316 0.59 +0.2 380,356 - PP_0316 0.59 +0.8 380,394 + PP_0316 0.62 +0.6 380,394 + PP_0316 0.62 +1.3 380,666 + PP_0316 0.87 -3.7 380,667 - PP_0316 0.87 -0.2 380,667 - PP_0316 0.87 +3.9 380,757 + +3.4 380,757 + +2.4 380,758 - +0.1 380,758 - -0.2 380,758 - +0.7 380,758 - -1.9 380,758 - +2.0 380,920 + -0.6 380,921 - -0.5 380,921 - +0.6 380,937 + -4.2 380,938 - -2.2 381,066 + -1.9 381,219 + +0.4 381,220 - PP_0317 0.19 -0.3 381,220 - PP_0317 0.19 +1.2 381,220 - PP_0317 0.19 +0.6 381,287 + PP_0317 0.23 -0.5 381,288 - PP_0317 0.23 +0.0 381,288 - PP_0317 0.23 -4.0 381,288 - PP_0317 0.23 +1.9 381,461 + PP_0317 0.33 +2.2 381,461 + PP_0317 0.33 -4.8 381,462 - PP_0317 0.33 -2.6 381,762 - PP_0317 0.52 +2.7 381,905 + PP_0317 0.61 +1.1 381,905 + PP_0317 0.61 -0.2 381,942 + PP_0317 0.63 -1.6 381,942 + PP_0317 0.63 +1.4 381,942 + PP_0317 0.63 +0.1 381,943 - PP_0317 0.63 +0.7 381,991 + PP_0317 0.66 -1.9 381,991 + PP_0317 0.66 -2.2 382,044 + PP_0317 0.69 +0.6 382,045 - PP_0317 0.69 +1.1 382,045 - PP_0317 0.69 -2.4 382,045 - PP_0317 0.69 +0.3 382,172 - PP_0317 0.77 +1.3 382,241 - PP_0317 0.81 +1.8 382,287 - PP_0317 0.84 -1.2 382,356 + PP_0317 0.88 -0.7 382,357 - PP_0317 0.88 -1.9 382,439 + +0.7 382,440 - +0.0 382,440 - +0.7 382,440 - -2.4 382,464 - +1.3 382,464 - +1.6 382,523 + +1.4 382,704 - +2.1 382,732 + -2.7 382,733 - +2.2 382,747 + -0.2 382,747 + -2.8 382,756 + -2.0 382,804 + -4.0 382,805 - -0.2 383,223 + PP_0319 0.61 -3.6 383,224 - PP_0319 0.61 -1.1 383,338 + +0.4 383,339 - -1.2 383,463 + +3.9 383,502 + +0.8 383,503 - -3.3 383,503 - -1.3 383,516 + -1.3 383,516 + +1.1 383,516 + +1.4 383,528 + -3.0 383,528 + +1.4 383,528 + +0.3 383,528 + -0.9 383,528 + +4.4 383,528 + -2.6 383,528 + +0.2 383,529 - -0.4 383,529 - -3.2 383,529 - +3.0 383,529 - +1.9 383,529 - +0.7 383,537 + -3.7 383,538 - +1.3
Or see this region's nucleotide sequence