Experiment: pH 9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0245 and PP_0246 overlap by 44 nucleotides PP_0246 and PP_0247 are separated by 13 nucleotides
PP_0245: PP_0245 - putative transcriptional accessory protein, at 298,540 to 301,125
_0245
PP_0246: PP_0246 - two-component system DNA-binding response transcriptional dual regulator, at 301,082 to 301,822
_0246
PP_0247: PP_0247 - Osmolarity sensor protein EnvZ, at 301,836 to 303,149
_0247
Position (kb) 301
302 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 300.222 kb on + strand, within PP_0245 at 300.223 kb on - strand, within PP_0245 at 300.223 kb on - strand, within PP_0245 at 300.248 kb on + strand, within PP_0245 at 300.248 kb on + strand, within PP_0245 at 300.249 kb on - strand, within PP_0245 at 300.323 kb on + strand, within PP_0245 at 300.324 kb on - strand, within PP_0245 at 300.324 kb on - strand, within PP_0245 at 300.380 kb on + strand, within PP_0245 at 300.381 kb on - strand, within PP_0245 at 300.381 kb on - strand, within PP_0245 at 300.551 kb on + strand, within PP_0245 at 300.561 kb on - strand, within PP_0245 at 300.561 kb on - strand, within PP_0245 at 300.561 kb on - strand, within PP_0245 at 300.843 kb on + strand, within PP_0245 at 300.866 kb on + strand, within PP_0245 at 300.867 kb on - strand at 300.867 kb on - strand at 300.888 kb on + strand at 300.889 kb on - strand at 300.943 kb on + strand at 300.943 kb on + strand at 300.943 kb on + strand at 300.943 kb on + strand at 300.944 kb on - strand at 300.944 kb on - strand at 300.944 kb on - strand at 300.945 kb on + strand at 300.946 kb on - strand at 300.946 kb on - strand at 300.946 kb on - strand at 301.078 kb on - strand at 301.078 kb on - strand at 301.185 kb on - strand, within PP_0246 at 301.403 kb on + strand, within PP_0246 at 301.527 kb on - strand, within PP_0246 at 301.761 kb on - strand at 301.761 kb on - strand at 301.787 kb on + strand at 301.787 kb on + strand at 301.788 kb on - strand at 301.932 kb on + strand at 301.933 kb on - strand at 301.972 kb on - strand, within PP_0247 at 301.972 kb on - strand, within PP_0247 at 302.004 kb on + strand, within PP_0247 at 302.005 kb on - strand, within PP_0247 at 302.005 kb on - strand, within PP_0247 at 302.058 kb on - strand, within PP_0247 at 302.058 kb on - strand, within PP_0247 at 302.106 kb on + strand, within PP_0247 at 302.106 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.118 kb on + strand, within PP_0247 at 302.119 kb on - strand, within PP_0247 at 302.119 kb on - strand, within PP_0247 at 302.119 kb on - strand, within PP_0247 at 302.241 kb on + strand, within PP_0247 at 302.448 kb on + strand, within PP_0247 at 302.448 kb on + strand, within PP_0247 at 302.448 kb on + strand, within PP_0247 at 302.449 kb on - strand, within PP_0247 at 302.449 kb on - strand, within PP_0247 at 302.731 kb on - strand, within PP_0247 at 302.731 kb on - strand, within PP_0247
Per-strain Table
Position Strand Gene LocusTag Fraction pH 9 remove 300,222 + PP_0245 0.65 -0.6 300,223 - PP_0245 0.65 -2.2 300,223 - PP_0245 0.65 +0.0 300,248 + PP_0245 0.66 +0.4 300,248 + PP_0245 0.66 -3.9 300,249 - PP_0245 0.66 +2.4 300,323 + PP_0245 0.69 -1.2 300,324 - PP_0245 0.69 -0.8 300,324 - PP_0245 0.69 +0.4 300,380 + PP_0245 0.71 -1.2 300,381 - PP_0245 0.71 +4.5 300,381 - PP_0245 0.71 -1.8 300,551 + PP_0245 0.78 -0.9 300,561 - PP_0245 0.78 -2.1 300,561 - PP_0245 0.78 +0.1 300,561 - PP_0245 0.78 +0.1 300,843 + PP_0245 0.89 -1.9 300,866 + PP_0245 0.90 +1.1 300,867 - +1.2 300,867 - +3.0 300,888 + +3.4 300,889 - +0.3 300,943 + +0.9 300,943 + +0.4 300,943 + +1.0 300,943 + -3.1 300,944 - +0.1 300,944 - +0.6 300,944 - +0.6 300,945 + -0.7 300,946 - -0.5 300,946 - -0.6 300,946 - +1.0 301,078 - -4.2 301,078 - +1.4 301,185 - PP_0246 0.14 -2.8 301,403 + PP_0246 0.43 -2.4 301,527 - PP_0246 0.60 -3.1 301,761 - -1.2 301,761 - -2.9 301,787 + +0.4 301,787 + +0.4 301,788 - +0.4 301,932 + +0.2 301,933 - -2.4 301,972 - PP_0247 0.10 -0.0 301,972 - PP_0247 0.10 +1.4 302,004 + PP_0247 0.13 +0.7 302,005 - PP_0247 0.13 -0.8 302,005 - PP_0247 0.13 +2.9 302,058 - PP_0247 0.17 +1.0 302,058 - PP_0247 0.17 +1.0 302,106 + PP_0247 0.21 -0.3 302,106 + PP_0247 0.21 -1.2 302,118 + PP_0247 0.21 +0.9 302,118 + PP_0247 0.21 -1.7 302,118 + PP_0247 0.21 -3.8 302,118 + PP_0247 0.21 -0.6 302,119 - PP_0247 0.22 -1.5 302,119 - PP_0247 0.22 +3.0 302,119 - PP_0247 0.22 -0.1 302,241 + PP_0247 0.31 -1.3 302,448 + PP_0247 0.47 +0.8 302,448 + PP_0247 0.47 +0.4 302,448 + PP_0247 0.47 +0.4 302,449 - PP_0247 0.47 -0.0 302,449 - PP_0247 0.47 +0.7 302,731 - PP_0247 0.68 -1.7 302,731 - PP_0247 0.68 -1.9
Or see this region's nucleotide sequence