Strain Fitness in Pseudomonas putida KT2440 around PP_0243

Experiment: pH 9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0241 and PP_0242 are separated by 141 nucleotidesPP_0242 and PP_0243 overlap by 1 nucleotidesPP_0243 and PP_0244 are separated by 153 nucleotidesPP_0244 and PP_0245 overlap by 1 nucleotides PP_0241: PP_0241 - Transporter, at 295,437 to 295,652 _0241 PP_0242: PP_0242 - Transcriptional regulator, TetR family, at 295,794 to 296,426 _0242 PP_0243: PP_0243 - Glutamate--cysteine ligase, at 296,426 to 298,003 _0243 PP_0244: PP_0244 - conserved protein of unknown function, at 298,157 to 298,540 _0244 PP_0245: PP_0245 - putative transcriptional accessory protein, at 298,540 to 301,125 _0245 Position (kb) 296 297 298 299Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 295.442 kb on + strandat 295.443 kb on - strandat 295.443 kb on - strandat 295.443 kb on - strandat 295.478 kb on + strand, within PP_0241at 295.479 kb on - strand, within PP_0241at 295.559 kb on + strand, within PP_0241at 295.560 kb on - strand, within PP_0241at 295.637 kb on + strandat 295.637 kb on + strandat 295.828 kb on + strandat 295.829 kb on - strandat 295.829 kb on - strandat 295.840 kb on + strandat 295.841 kb on - strandat 295.841 kb on - strandat 295.915 kb on + strand, within PP_0242at 295.915 kb on + strand, within PP_0242at 295.915 kb on + strand, within PP_0242at 295.915 kb on + strand, within PP_0242at 295.915 kb on + strand, within PP_0242at 295.916 kb on - strand, within PP_0242at 295.916 kb on - strand, within PP_0242at 295.916 kb on - strand, within PP_0242at 295.916 kb on - strand, within PP_0242at 295.916 kb on - strand, within PP_0242at 295.916 kb on - strand, within PP_0242at 296.053 kb on - strand, within PP_0242at 296.110 kb on + strand, within PP_0242at 296.110 kb on + strand, within PP_0242at 296.111 kb on - strand, within PP_0242at 296.111 kb on - strand, within PP_0242at 296.114 kb on + strand, within PP_0242at 296.115 kb on - strand, within PP_0242at 296.115 kb on - strand, within PP_0242at 296.225 kb on + strand, within PP_0242at 296.225 kb on + strand, within PP_0242at 296.226 kb on - strand, within PP_0242at 296.226 kb on - strand, within PP_0242at 296.308 kb on + strand, within PP_0242at 296.308 kb on + strand, within PP_0242at 296.312 kb on + strand, within PP_0242at 296.458 kb on - strandat 297.109 kb on - strand, within PP_0243at 298.008 kb on + strandat 298.009 kb on - strandat 298.049 kb on + strandat 298.057 kb on + strandat 298.057 kb on + strandat 298.066 kb on - strandat 298.066 kb on - strandat 298.066 kb on - strandat 298.143 kb on + strandat 298.144 kb on - strandat 298.158 kb on + strandat 298.158 kb on + strandat 298.158 kb on + strandat 298.159 kb on - strandat 298.159 kb on - strandat 298.211 kb on + strand, within PP_0244at 298.211 kb on + strandat 298.211 kb on + strand, within PP_0244at 298.211 kb on + strand, within PP_0244at 298.212 kb on - strand, within PP_0244at 298.299 kb on + strand, within PP_0244at 298.299 kb on + strand, within PP_0244at 298.299 kb on + strand, within PP_0244at 298.299 kb on + strand, within PP_0244at 298.300 kb on - strand, within PP_0244at 298.521 kb on + strandat 298.522 kb on - strandat 298.532 kb on + strandat 298.532 kb on + strandat 298.533 kb on - strandat 298.541 kb on + strandat 298.541 kb on + strandat 298.541 kb on + strandat 298.542 kb on - strandat 298.833 kb on + strand, within PP_0245at 298.834 kb on - strand, within PP_0245at 298.834 kb on - strandat 298.888 kb on - strand, within PP_0245

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 9
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295,442 + -2.4
295,443 - -5.6
295,443 - +3.6
295,443 - -1.0
295,478 + PP_0241 0.19 -0.4
295,479 - PP_0241 0.19 +1.2
295,559 + PP_0241 0.56 -2.3
295,560 - PP_0241 0.57 -0.1
295,637 + +0.1
295,637 + +1.4
295,828 + +1.1
295,829 - +3.7
295,829 - -3.1
295,840 + +0.4
295,841 - -0.6
295,841 - -2.8
295,915 + PP_0242 0.19 +1.1
295,915 + PP_0242 0.19 -0.0
295,915 + PP_0242 0.19 -3.7
295,915 + PP_0242 0.19 -0.8
295,915 + PP_0242 0.19 -1.9
295,916 - PP_0242 0.19 -0.3
295,916 - PP_0242 0.19 -1.2
295,916 - PP_0242 0.19 -4.2
295,916 - PP_0242 0.19 +1.2
295,916 - PP_0242 0.19 -0.6
295,916 - PP_0242 0.19 +1.1
296,053 - PP_0242 0.41 -0.8
296,110 + PP_0242 0.50 -2.2
296,110 + PP_0242 0.50 +0.4
296,111 - PP_0242 0.50 +0.4
296,111 - PP_0242 0.50 -2.6
296,114 + PP_0242 0.51 +0.4
296,115 - PP_0242 0.51 -0.8
296,115 - PP_0242 0.51 +0.0
296,225 + PP_0242 0.68 -0.6
296,225 + PP_0242 0.68 -2.2
296,226 - PP_0242 0.68 -1.5
296,226 - PP_0242 0.68 -1.2
296,308 + PP_0242 0.81 -0.2
296,308 + PP_0242 0.81 -3.7
296,312 + PP_0242 0.82 +3.0
296,458 - -0.6
297,109 - PP_0243 0.43 -0.7
298,008 + +0.4
298,009 - +1.0
298,049 + -0.6
298,057 + +0.4
298,057 + -0.6
298,066 - +0.4
298,066 - -1.6
298,066 - -0.9
298,143 + -0.6
298,144 - -0.2
298,158 + +0.2
298,158 + -2.9
298,158 + +0.3
298,159 - -3.4
298,159 - +3.4
298,211 + PP_0244 0.14 -0.1
298,211 + +0.4
298,211 + PP_0244 0.14 -1.2
298,211 + PP_0244 0.14 -0.9
298,212 - PP_0244 0.14 +0.9
298,299 + PP_0244 0.37 +0.3
298,299 + PP_0244 0.37 +1.9
298,299 + PP_0244 0.37 -1.6
298,299 + PP_0244 0.37 +1.3
298,300 - PP_0244 0.37 -0.7
298,521 + +1.8
298,522 - -1.1
298,532 + -2.8
298,532 + +1.3
298,533 - -0.0
298,541 + -1.6
298,541 + +1.0
298,541 + -1.0
298,542 - -0.0
298,833 + PP_0245 0.11 -0.6
298,834 - PP_0245 0.11 -1.2
298,834 - +0.4
298,888 - PP_0245 0.13 +0.4

Or see this region's nucleotide sequence