Strain Fitness in Pseudomonas putida KT2440 around PP_0213

Experiment: pH 9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0210 and PP_0211 overlap by 1 nucleotidesPP_0211 and PP_0213 are separated by 484 nucleotidesPP_0213 and PP_0214 are separated by 182 nucleotides PP_0210: PP_0210 - putative Phycobiliprotein, at 261,519 to 262,484 _0210 PP_0211: PP_0211 - conserved protein of unknown function, at 262,484 to 262,765 _0211 PP_0213: PP_0213 - succinate-semialdehyde dehydrogenase (NADP+), at 263,250 to 264,692 _0213 PP_0214: PP_0214 - 4-aminobutyrate aminotransferase, at 264,875 to 266,152 _0214 Position (kb) 263 264 265Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 262.288 kb on - strand, within PP_0210at 262.682 kb on + strand, within PP_0211at 262.683 kb on - strand, within PP_0211at 262.689 kb on + strand, within PP_0211at 262.689 kb on + strand, within PP_0211at 262.689 kb on + strand, within PP_0211at 262.689 kb on + strand, within PP_0211at 262.690 kb on - strand, within PP_0211at 262.727 kb on + strand, within PP_0211at 262.728 kb on - strand, within PP_0211at 262.728 kb on - strand, within PP_0211at 262.739 kb on + strandat 262.739 kb on + strandat 262.740 kb on - strandat 262.838 kb on - strandat 262.902 kb on + strandat 263.052 kb on - strandat 263.147 kb on - strandat 263.147 kb on - strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.290 kb on - strandat 263.290 kb on - strandat 263.290 kb on - strandat 263.291 kb on + strandat 263.291 kb on + strandat 263.292 kb on - strandat 263.292 kb on - strandat 263.292 kb on - strandat 263.297 kb on - strandat 263.628 kb on + strand, within PP_0213at 263.628 kb on + strand, within PP_0213at 263.628 kb on + strand, within PP_0213at 263.809 kb on - strand, within PP_0213at 264.131 kb on + strand, within PP_0213at 264.131 kb on + strand, within PP_0213at 264.131 kb on + strand, within PP_0213at 264.131 kb on + strand, within PP_0213at 264.132 kb on - strand, within PP_0213at 264.132 kb on - strand, within PP_0213at 264.132 kb on - strand, within PP_0213at 264.132 kb on - strand, within PP_0213at 264.135 kb on + strand, within PP_0213at 264.135 kb on + strand, within PP_0213at 264.136 kb on - strand, within PP_0213at 264.493 kb on - strand, within PP_0213at 264.605 kb on + strandat 264.642 kb on + strandat 264.643 kb on - strandat 264.643 kb on - strandat 264.657 kb on + strandat 264.658 kb on - strandat 264.693 kb on + strandat 264.694 kb on - strandat 264.694 kb on - strandat 264.701 kb on + strandat 264.702 kb on - strandat 264.710 kb on + strandat 264.710 kb on + strandat 264.711 kb on - strandat 264.711 kb on - strandat 264.711 kb on - strandat 264.711 kb on - strandat 264.756 kb on + strandat 264.766 kb on + strandat 264.767 kb on - strandat 264.806 kb on + strandat 264.806 kb on + strandat 264.806 kb on + strandat 264.874 kb on + strandat 264.874 kb on + strandat 264.874 kb on + strandat 264.874 kb on + strandat 264.875 kb on - strandat 264.913 kb on - strandat 265.062 kb on + strand, within PP_0214at 265.062 kb on + strand, within PP_0214at 265.124 kb on + strand, within PP_0214at 265.133 kb on + strand, within PP_0214at 265.133 kb on + strand, within PP_0214at 265.134 kb on - strand, within PP_0214at 265.137 kb on + strand, within PP_0214at 265.137 kb on + strand, within PP_0214at 265.137 kb on + strand, within PP_0214at 265.137 kb on + strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.300 kb on + strand, within PP_0214at 265.300 kb on + strand, within PP_0214at 265.300 kb on + strand, within PP_0214at 265.340 kb on + strand, within PP_0214at 265.341 kb on - strand, within PP_0214at 265.408 kb on + strand, within PP_0214at 265.500 kb on + strand, within PP_0214at 265.599 kb on + strand, within PP_0214

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 9
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262,288 - PP_0210 0.80 -3.0
262,682 + PP_0211 0.70 -1.3
262,683 - PP_0211 0.71 +2.4
262,689 + PP_0211 0.73 -2.8
262,689 + PP_0211 0.73 +0.6
262,689 + PP_0211 0.73 +0.6
262,689 + PP_0211 0.73 +1.5
262,690 - PP_0211 0.73 -1.4
262,727 + PP_0211 0.86 +0.9
262,728 - PP_0211 0.87 -2.2
262,728 - PP_0211 0.87 +0.4
262,739 + -0.4
262,739 + -0.6
262,740 - -4.3
262,838 - -0.4
262,902 + -0.6
263,052 - -1.1
263,147 - +2.1
263,147 - -1.4
263,289 + -1.9
263,289 + +0.3
263,289 + -0.4
263,289 + -0.5
263,289 + -2.2
263,289 + -0.6
263,289 + +0.4
263,290 - -1.2
263,290 - +0.4
263,290 - +0.7
263,291 + +3.7
263,291 + -3.5
263,292 - +0.4
263,292 - +0.4
263,292 - +2.0
263,297 - -1.5
263,628 + PP_0213 0.26 +0.8
263,628 + PP_0213 0.26 +1.8
263,628 + PP_0213 0.26 +4.0
263,809 - PP_0213 0.39 -1.2
264,131 + PP_0213 0.61 -0.6
264,131 + PP_0213 0.61 -1.2
264,131 + PP_0213 0.61 +1.1
264,131 + PP_0213 0.61 +0.9
264,132 - PP_0213 0.61 +1.4
264,132 - PP_0213 0.61 +0.4
264,132 - PP_0213 0.61 -3.1
264,132 - PP_0213 0.61 +4.1
264,135 + PP_0213 0.61 +0.4
264,135 + PP_0213 0.61 +4.9
264,136 - PP_0213 0.61 +3.0
264,493 - PP_0213 0.86 -1.2
264,605 + +0.4
264,642 + +0.4
264,643 - +1.5
264,643 - -1.9
264,657 + +0.2
264,658 - +1.4
264,693 + -0.2
264,694 - +0.4
264,694 - +0.4
264,701 + -1.5
264,702 - -0.7
264,710 + -2.4
264,710 + -1.2
264,711 - -1.9
264,711 - +4.1
264,711 - +4.0
264,711 - +0.4
264,756 + +0.1
264,766 + +3.4
264,767 - -3.2
264,806 + -2.4
264,806 + -1.3
264,806 + -1.0
264,874 + +0.4
264,874 + -2.2
264,874 + +2.7
264,874 + -1.4
264,875 - -1.9
264,913 - -1.8
265,062 + PP_0214 0.15 -2.2
265,062 + PP_0214 0.15 +0.4
265,124 + PP_0214 0.19 +0.4
265,133 + PP_0214 0.20 +0.4
265,133 + PP_0214 0.20 +1.7
265,134 - PP_0214 0.20 +0.4
265,137 + PP_0214 0.21 +1.4
265,137 + PP_0214 0.21 -3.0
265,137 + PP_0214 0.21 -0.3
265,137 + PP_0214 0.21 +0.4
265,138 - PP_0214 0.21 -2.9
265,138 - PP_0214 0.21 +3.6
265,138 - PP_0214 0.21 -2.9
265,138 - PP_0214 0.21 +2.4
265,138 - PP_0214 0.21 +0.4
265,300 + PP_0214 0.33 -3.4
265,300 + PP_0214 0.33 +0.4
265,300 + PP_0214 0.33 +2.7
265,340 + PP_0214 0.36 +0.8
265,341 - PP_0214 0.36 -3.3
265,408 + PP_0214 0.42 +0.4
265,500 + PP_0214 0.49 +0.4
265,599 + PP_0214 0.57 +2.0

Or see this region's nucleotide sequence