Experiment: pH 9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0118 and PP_0119 overlap by 4 nucleotides PP_0119 and PP_0120 are separated by 66 nucleotides PP_0120 and PP_0121 are separated by 49 nucleotides
PP_0118: PP_0118 - zinc import ATP-binding protein, at 123,860 to 124,633
_0118
PP_0119: PP_0119 - putative zinc uptake regulation protein ZUR, at 124,630 to 125,115
_0119
PP_0120: PP_0120 - putative zinc ABC transporter, at 125,182 to 126,090
_0120
PP_0121: PP_0121 - homoserine kinase, at 126,140 to 127,090
_0121
Position (kb) 125
126
127 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 124.187 kb on + strand, within PP_0118 at 124.187 kb on + strand, within PP_0118 at 124.188 kb on - strand, within PP_0118 at 124.271 kb on - strand, within PP_0118 at 124.271 kb on - strand, within PP_0118 at 124.343 kb on + strand, within PP_0118 at 124.344 kb on - strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.419 kb on + strand, within PP_0118 at 124.420 kb on - strand, within PP_0118 at 124.448 kb on + strand, within PP_0118 at 124.482 kb on - strand, within PP_0118 at 124.482 kb on - strand, within PP_0118 at 124.650 kb on + strand at 124.651 kb on - strand at 124.853 kb on - strand, within PP_0119 at 124.889 kb on + strand, within PP_0119 at 124.889 kb on + strand, within PP_0119 at 125.065 kb on + strand, within PP_0119 at 125.065 kb on + strand, within PP_0119 at 125.065 kb on + strand, within PP_0119 at 125.066 kb on - strand, within PP_0119 at 125.066 kb on - strand, within PP_0119 at 125.144 kb on + strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.145 kb on - strand at 125.147 kb on + strand at 125.147 kb on + strand at 125.147 kb on + strand at 125.147 kb on + strand at 125.148 kb on - strand at 125.153 kb on - strand at 125.174 kb on + strand at 125.256 kb on + strand at 125.256 kb on + strand at 125.347 kb on + strand, within PP_0120 at 125.398 kb on + strand, within PP_0120 at 125.452 kb on - strand, within PP_0120 at 125.452 kb on - strand, within PP_0120 at 125.452 kb on - strand, within PP_0120 at 125.572 kb on - strand, within PP_0120 at 125.572 kb on - strand, within PP_0120 at 125.727 kb on + strand, within PP_0120 at 125.727 kb on + strand, within PP_0120 at 125.728 kb on - strand, within PP_0120 at 125.728 kb on - strand, within PP_0120 at 125.807 kb on - strand, within PP_0120 at 126.031 kb on + strand at 126.032 kb on - strand at 126.088 kb on + strand at 126.088 kb on + strand at 126.088 kb on + strand at 126.088 kb on + strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.089 kb on - strand at 126.141 kb on + strand at 126.141 kb on + strand at 126.345 kb on + strand at 126.629 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 9 remove 124,187 + PP_0118 0.42 -3.5 124,187 + PP_0118 0.42 -1.0 124,188 - PP_0118 0.42 +0.4 124,271 - PP_0118 0.53 -0.8 124,271 - PP_0118 0.53 -2.9 124,343 + PP_0118 0.62 +0.2 124,344 - PP_0118 0.63 -2.9 124,419 + PP_0118 0.72 +2.0 124,419 + PP_0118 0.72 -1.4 124,419 + PP_0118 0.72 -3.6 124,420 - PP_0118 0.72 -0.1 124,448 + PP_0118 0.76 -4.0 124,482 - PP_0118 0.80 -0.4 124,482 - PP_0118 0.80 -2.8 124,650 + -3.3 124,651 - -2.2 124,853 - PP_0119 0.46 -3.9 124,889 + PP_0119 0.53 -4.4 124,889 + PP_0119 0.53 -0.1 125,065 + PP_0119 0.90 -3.3 125,065 + PP_0119 0.90 +0.9 125,065 + PP_0119 0.90 -2.5 125,066 - PP_0119 0.90 -2.6 125,066 - PP_0119 0.90 -1.7 125,144 + -1.9 125,145 - -0.3 125,145 - +1.4 125,145 - +0.4 125,145 - +0.0 125,145 - +0.9 125,147 + -3.2 125,147 + +0.4 125,147 + -2.7 125,147 + +0.4 125,148 - +0.4 125,153 - -1.5 125,174 + +0.7 125,256 + -0.1 125,256 + -0.4 125,347 + PP_0120 0.18 -2.7 125,398 + PP_0120 0.24 -1.2 125,452 - PP_0120 0.30 -1.9 125,452 - PP_0120 0.30 -1.4 125,452 - PP_0120 0.30 -1.9 125,572 - PP_0120 0.43 -0.6 125,572 - PP_0120 0.43 -0.2 125,727 + PP_0120 0.60 -3.6 125,727 + PP_0120 0.60 -0.4 125,728 - PP_0120 0.60 -1.6 125,728 - PP_0120 0.60 -3.7 125,807 - PP_0120 0.69 -4.4 126,031 + -0.4 126,032 - -1.9 126,088 + +0.7 126,088 + +0.9 126,088 + -1.7 126,088 + -1.2 126,089 - +2.4 126,089 - +1.0 126,089 - +0.3 126,089 - +4.1 126,089 - -0.1 126,089 - +1.1 126,141 + -1.3 126,141 + +0.2 126,345 + +0.4 126,629 + +0.4
Or see this region's nucleotide sequence