Strain Fitness in Pseudomonas putida KT2440 around PP_0114

Experiment: pH 9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0112 and PP_0113 are separated by 64 nucleotidesPP_0113 and PP_0114 overlap by 1 nucleotidesPP_0114 and PP_0115 are separated by 227 nucleotides PP_0112: PP_0112 - methionine ABC transporter, periplasmic binding protein, at 117,314 to 118,084 _0112 PP_0113: PP_0113 - methionine ABC transporter, permease protein, at 118,149 to 118,820 _0113 PP_0114: PP_0114 - methionine ABC transporter ATP-binding protein, at 118,820 to 119,827 _0114 PP_0115: PP_0115 - hydroperoxidase - self catalytic heme d synthase, at 120,055 to 122,190 _0115 Position (kb) 118 119 120Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 117.852 kb on + strand, within PP_0112at 117.853 kb on - strand, within PP_0112at 117.918 kb on + strand, within PP_0112at 117.919 kb on - strand, within PP_0112at 117.919 kb on - strand, within PP_0112at 117.947 kb on + strand, within PP_0112at 118.022 kb on - strandat 118.150 kb on + strandat 118.150 kb on + strandat 118.151 kb on - strandat 118.151 kb on - strandat 118.154 kb on + strandat 118.209 kb on + strandat 118.209 kb on + strandat 118.221 kb on + strand, within PP_0113at 118.221 kb on + strand, within PP_0113at 118.221 kb on + strand, within PP_0113at 118.233 kb on + strand, within PP_0113at 118.234 kb on - strand, within PP_0113at 118.324 kb on + strand, within PP_0113at 118.354 kb on - strand, within PP_0113at 118.512 kb on + strand, within PP_0113at 118.551 kb on - strand, within PP_0113at 118.645 kb on + strand, within PP_0113at 118.645 kb on + strand, within PP_0113at 118.645 kb on + strand, within PP_0113at 118.646 kb on - strand, within PP_0113at 118.646 kb on - strand, within PP_0113at 118.716 kb on + strand, within PP_0113at 118.716 kb on + strand, within PP_0113at 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.841 kb on + strandat 118.841 kb on + strandat 118.841 kb on + strandat 118.841 kb on + strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.939 kb on + strand, within PP_0114at 118.959 kb on + strand, within PP_0114at 118.959 kb on + strand, within PP_0114at 118.959 kb on + strand, within PP_0114at 118.960 kb on - strand, within PP_0114at 118.960 kb on - strand, within PP_0114at 119.004 kb on + strand, within PP_0114at 119.004 kb on + strand, within PP_0114at 119.004 kb on + strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.033 kb on + strand, within PP_0114at 119.336 kb on + strand, within PP_0114at 119.336 kb on + strand, within PP_0114at 119.336 kb on + strand, within PP_0114at 119.337 kb on - strand, within PP_0114at 119.453 kb on + strand, within PP_0114at 119.797 kb on - strandat 119.803 kb on + strandat 119.803 kb on + strandat 119.803 kb on + strandat 119.803 kb on + strandat 119.803 kb on + strandat 119.804 kb on - strandat 119.804 kb on - strandat 119.804 kb on - strandat 119.804 kb on - strandat 119.808 kb on - strandat 119.808 kb on - strandat 119.808 kb on - strandat 119.830 kb on - strandat 119.902 kb on + strandat 119.903 kb on - strandat 119.903 kb on - strandat 119.919 kb on + strandat 119.948 kb on + strandat 119.948 kb on + strandat 119.948 kb on + strandat 120.001 kb on + strandat 120.001 kb on + strandat 120.002 kb on - strandat 120.032 kb on - strandat 120.367 kb on + strand, within PP_0115at 120.368 kb on - strand, within PP_0115at 120.515 kb on - strand, within PP_0115at 120.552 kb on + strand, within PP_0115at 120.552 kb on + strand, within PP_0115at 120.552 kb on + strand, within PP_0115at 120.552 kb on + strand, within PP_0115at 120.553 kb on - strand, within PP_0115at 120.553 kb on - strand, within PP_0115at 120.699 kb on + strand, within PP_0115at 120.700 kb on - strand, within PP_0115at 120.700 kb on - strand, within PP_0115at 120.700 kb on - strand, within PP_0115at 120.771 kb on + strand, within PP_0115at 120.771 kb on + strand, within PP_0115at 120.771 kb on + strand, within PP_0115

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 9
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117,852 + PP_0112 0.70 -1.6
117,853 - PP_0112 0.70 -1.5
117,918 + PP_0112 0.78 +0.8
117,919 - PP_0112 0.78 +0.0
117,919 - PP_0112 0.78 +0.4
117,947 + PP_0112 0.82 +1.8
118,022 - -0.2
118,150 + -1.3
118,150 + +0.4
118,151 - -1.9
118,151 - +0.2
118,154 + -1.0
118,209 + +0.0
118,209 + +2.5
118,221 + PP_0113 0.11 -2.0
118,221 + PP_0113 0.11 +1.2
118,221 + PP_0113 0.11 -2.0
118,233 + PP_0113 0.12 +2.0
118,234 - PP_0113 0.13 -0.1
118,324 + PP_0113 0.26 +1.6
118,354 - PP_0113 0.31 -3.6
118,512 + PP_0113 0.54 -0.4
118,551 - PP_0113 0.60 -0.2
118,645 + PP_0113 0.74 -1.2
118,645 + PP_0113 0.74 -2.3
118,645 + PP_0113 0.74 +2.4
118,646 - PP_0113 0.74 +0.2
118,646 - PP_0113 0.74 -3.5
118,716 + PP_0113 0.84 -1.3
118,716 + PP_0113 0.84 -1.5
118,837 + -2.9
118,837 + -2.6
118,837 + +3.0
118,837 + +0.8
118,837 + +1.8
118,837 + -2.9
118,837 + +0.3
118,837 + +0.4
118,838 - +4.0
118,838 - +1.0
118,838 - +0.4
118,838 - +1.2
118,838 - -0.5
118,838 - +0.4
118,838 - -0.6
118,841 + +1.3
118,841 + -0.3
118,841 + +0.3
118,841 + +0.4
118,842 - -2.9
118,842 - -1.6
118,842 - -0.1
118,842 - -0.1
118,842 - -0.6
118,939 + PP_0114 0.12 +0.4
118,959 + PP_0114 0.14 +0.4
118,959 + PP_0114 0.14 -1.6
118,959 + PP_0114 0.14 -0.6
118,960 - PP_0114 0.14 -4.3
118,960 - PP_0114 0.14 +0.4
119,004 + PP_0114 0.18 -4.0
119,004 + PP_0114 0.18 +0.4
119,004 + PP_0114 0.18 -3.2
119,005 - PP_0114 0.18 +0.9
119,005 - PP_0114 0.18 -0.1
119,005 - PP_0114 0.18 +0.4
119,005 - PP_0114 0.18 -1.6
119,033 + PP_0114 0.21 +0.4
119,336 + PP_0114 0.51 -0.4
119,336 + PP_0114 0.51 -1.1
119,336 + PP_0114 0.51 -1.6
119,337 - PP_0114 0.51 -2.7
119,453 + PP_0114 0.63 -2.4
119,797 - -3.0
119,803 + +0.5
119,803 + -0.5
119,803 + +3.2
119,803 + -2.2
119,803 + -2.9
119,804 - +0.4
119,804 - -3.2
119,804 - +0.6
119,804 - +0.8
119,808 - +0.6
119,808 - +0.4
119,808 - +0.9
119,830 - +0.4
119,902 + +0.2
119,903 - +0.7
119,903 - -3.4
119,919 + -2.2
119,948 + +0.3
119,948 + +1.2
119,948 + -3.0
120,001 + +0.0
120,001 + +0.8
120,002 - +1.0
120,032 - +0.3
120,367 + PP_0115 0.15 +0.4
120,368 - PP_0115 0.15 +1.2
120,515 - PP_0115 0.22 +0.4
120,552 + PP_0115 0.23 +0.4
120,552 + PP_0115 0.23 -0.9
120,552 + PP_0115 0.23 -2.7
120,552 + PP_0115 0.23 +2.9
120,553 - PP_0115 0.23 +0.6
120,553 - PP_0115 0.23 -2.0
120,699 + PP_0115 0.30 +3.4
120,700 - PP_0115 0.30 +2.0
120,700 - PP_0115 0.30 -0.0
120,700 - PP_0115 0.30 -1.8
120,771 + PP_0115 0.34 +1.4
120,771 + PP_0115 0.34 -1.6
120,771 + PP_0115 0.34 +0.9

Or see this region's nucleotide sequence