Strain Fitness in Pseudomonas putida KT2440 around PP_0113

Experiment: pH 9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0111 and PP_0112 are separated by 93 nucleotidesPP_0112 and PP_0113 are separated by 64 nucleotidesPP_0113 and PP_0114 overlap by 1 nucleotides PP_0111: PP_0111 - Electron transport protein SCO1/SenC, at 116,588 to 117,220 _0111 PP_0112: PP_0112 - methionine ABC transporter, periplasmic binding protein, at 117,314 to 118,084 _0112 PP_0113: PP_0113 - methionine ABC transporter, permease protein, at 118,149 to 118,820 _0113 PP_0114: PP_0114 - methionine ABC transporter ATP-binding protein, at 118,820 to 119,827 _0114 Position (kb) 118 119Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 117.237 kb on - strandat 117.237 kb on - strandat 117.256 kb on + strandat 117.256 kb on + strandat 117.257 kb on - strandat 117.257 kb on - strandat 117.257 kb on - strandat 117.295 kb on + strandat 117.305 kb on + strandat 117.305 kb on + strandat 117.306 kb on - strandat 117.343 kb on - strandat 117.450 kb on + strand, within PP_0112at 117.451 kb on - strand, within PP_0112at 117.451 kb on - strand, within PP_0112at 117.516 kb on + strand, within PP_0112at 117.517 kb on - strand, within PP_0112at 117.517 kb on - strand, within PP_0112at 117.542 kb on + strand, within PP_0112at 117.542 kb on + strand, within PP_0112at 117.542 kb on + strand, within PP_0112at 117.543 kb on - strand, within PP_0112at 117.774 kb on + strand, within PP_0112at 117.774 kb on + strand, within PP_0112at 117.775 kb on - strand, within PP_0112at 117.775 kb on - strand, within PP_0112at 117.775 kb on - strand, within PP_0112at 117.852 kb on + strand, within PP_0112at 117.853 kb on - strand, within PP_0112at 117.918 kb on + strand, within PP_0112at 117.919 kb on - strand, within PP_0112at 117.919 kb on - strand, within PP_0112at 117.947 kb on + strand, within PP_0112at 118.022 kb on - strandat 118.150 kb on + strandat 118.150 kb on + strandat 118.151 kb on - strandat 118.151 kb on - strandat 118.154 kb on + strandat 118.209 kb on + strandat 118.209 kb on + strandat 118.221 kb on + strand, within PP_0113at 118.221 kb on + strand, within PP_0113at 118.221 kb on + strand, within PP_0113at 118.233 kb on + strand, within PP_0113at 118.234 kb on - strand, within PP_0113at 118.324 kb on + strand, within PP_0113at 118.354 kb on - strand, within PP_0113at 118.512 kb on + strand, within PP_0113at 118.551 kb on - strand, within PP_0113at 118.645 kb on + strand, within PP_0113at 118.645 kb on + strand, within PP_0113at 118.645 kb on + strand, within PP_0113at 118.646 kb on - strand, within PP_0113at 118.646 kb on - strand, within PP_0113at 118.716 kb on + strand, within PP_0113at 118.716 kb on + strand, within PP_0113at 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.837 kb on + strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.838 kb on - strandat 118.841 kb on + strandat 118.841 kb on + strandat 118.841 kb on + strandat 118.841 kb on + strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.842 kb on - strandat 118.939 kb on + strand, within PP_0114at 118.959 kb on + strand, within PP_0114at 118.959 kb on + strand, within PP_0114at 118.959 kb on + strand, within PP_0114at 118.960 kb on - strand, within PP_0114at 118.960 kb on - strand, within PP_0114at 119.004 kb on + strand, within PP_0114at 119.004 kb on + strand, within PP_0114at 119.004 kb on + strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.005 kb on - strand, within PP_0114at 119.033 kb on + strand, within PP_0114at 119.336 kb on + strand, within PP_0114at 119.336 kb on + strand, within PP_0114at 119.336 kb on + strand, within PP_0114at 119.337 kb on - strand, within PP_0114at 119.453 kb on + strand, within PP_0114at 119.797 kb on - strandat 119.803 kb on + strandat 119.803 kb on + strandat 119.803 kb on + strandat 119.803 kb on + strandat 119.803 kb on + strandat 119.804 kb on - strandat 119.804 kb on - strandat 119.804 kb on - strandat 119.804 kb on - strandat 119.808 kb on - strandat 119.808 kb on - strandat 119.808 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 9
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117,237 - +1.4
117,237 - +0.8
117,256 + +1.0
117,256 + -0.3
117,257 - -0.0
117,257 - +1.4
117,257 - -0.1
117,295 + +2.1
117,305 + -0.1
117,305 + -2.2
117,306 - +1.1
117,343 - +0.4
117,450 + PP_0112 0.18 -1.7
117,451 - PP_0112 0.18 +0.4
117,451 - PP_0112 0.18 -0.0
117,516 + PP_0112 0.26 -0.3
117,517 - PP_0112 0.26 -0.2
117,517 - PP_0112 0.26 +0.8
117,542 + PP_0112 0.30 -4.0
117,542 + PP_0112 0.30 -4.6
117,542 + PP_0112 0.30 +0.8
117,543 - PP_0112 0.30 +0.4
117,774 + PP_0112 0.60 +3.4
117,774 + PP_0112 0.60 -0.2
117,775 - PP_0112 0.60 -0.8
117,775 - PP_0112 0.60 +1.7
117,775 - PP_0112 0.60 +0.2
117,852 + PP_0112 0.70 -1.6
117,853 - PP_0112 0.70 -1.5
117,918 + PP_0112 0.78 +0.8
117,919 - PP_0112 0.78 +0.0
117,919 - PP_0112 0.78 +0.4
117,947 + PP_0112 0.82 +1.8
118,022 - -0.2
118,150 + -1.3
118,150 + +0.4
118,151 - -1.9
118,151 - +0.2
118,154 + -1.0
118,209 + +0.0
118,209 + +2.5
118,221 + PP_0113 0.11 -2.0
118,221 + PP_0113 0.11 +1.2
118,221 + PP_0113 0.11 -2.0
118,233 + PP_0113 0.12 +2.0
118,234 - PP_0113 0.13 -0.1
118,324 + PP_0113 0.26 +1.6
118,354 - PP_0113 0.31 -3.6
118,512 + PP_0113 0.54 -0.4
118,551 - PP_0113 0.60 -0.2
118,645 + PP_0113 0.74 -1.2
118,645 + PP_0113 0.74 -2.3
118,645 + PP_0113 0.74 +2.4
118,646 - PP_0113 0.74 +0.2
118,646 - PP_0113 0.74 -3.5
118,716 + PP_0113 0.84 -1.3
118,716 + PP_0113 0.84 -1.5
118,837 + -2.9
118,837 + -2.6
118,837 + +3.0
118,837 + +0.8
118,837 + +1.8
118,837 + -2.9
118,837 + +0.3
118,837 + +0.4
118,838 - +4.0
118,838 - +1.0
118,838 - +0.4
118,838 - +1.2
118,838 - -0.5
118,838 - +0.4
118,838 - -0.6
118,841 + +1.3
118,841 + -0.3
118,841 + +0.3
118,841 + +0.4
118,842 - -2.9
118,842 - -1.6
118,842 - -0.1
118,842 - -0.1
118,842 - -0.6
118,939 + PP_0114 0.12 +0.4
118,959 + PP_0114 0.14 +0.4
118,959 + PP_0114 0.14 -1.6
118,959 + PP_0114 0.14 -0.6
118,960 - PP_0114 0.14 -4.3
118,960 - PP_0114 0.14 +0.4
119,004 + PP_0114 0.18 -4.0
119,004 + PP_0114 0.18 +0.4
119,004 + PP_0114 0.18 -3.2
119,005 - PP_0114 0.18 +0.9
119,005 - PP_0114 0.18 -0.1
119,005 - PP_0114 0.18 +0.4
119,005 - PP_0114 0.18 -1.6
119,033 + PP_0114 0.21 +0.4
119,336 + PP_0114 0.51 -0.4
119,336 + PP_0114 0.51 -1.1
119,336 + PP_0114 0.51 -1.6
119,337 - PP_0114 0.51 -2.7
119,453 + PP_0114 0.63 -2.4
119,797 - -3.0
119,803 + +0.5
119,803 + -0.5
119,803 + +3.2
119,803 + -2.2
119,803 + -2.9
119,804 - +0.4
119,804 - -3.2
119,804 - +0.6
119,804 - +0.8
119,808 - +0.6
119,808 - +0.4
119,808 - +0.9

Or see this region's nucleotide sequence