Experiment: pH 9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0041 and PP_0042 are separated by 202 nucleotides PP_0042 and PP_0043 are separated by 162 nucleotides
PP_0041: PP_0041 - cadmium translocating P-type ATPase, at 43,527 to 45,524
_0041
PP_0042: PP_0042 - conserved exported protein of unknown function, at 45,727 to 46,050
_0042
PP_0043: PP_0043 - cation efflux system protein, at 46,213 to 49,374
_0043
Position (kb) 45
46
47 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 44.792 kb on + strand, within PP_0041 at 44.793 kb on - strand, within PP_0041 at 44.814 kb on + strand at 44.969 kb on + strand, within PP_0041 at 44.970 kb on - strand, within PP_0041 at 44.982 kb on + strand, within PP_0041 at 44.982 kb on + strand, within PP_0041 at 44.982 kb on + strand, within PP_0041 at 44.982 kb on + strand, within PP_0041 at 44.983 kb on - strand, within PP_0041 at 44.983 kb on - strand, within PP_0041 at 44.983 kb on - strand, within PP_0041 at 44.983 kb on - strand, within PP_0041 at 44.988 kb on + strand, within PP_0041 at 44.989 kb on - strand, within PP_0041 at 45.090 kb on + strand, within PP_0041 at 45.091 kb on - strand, within PP_0041 at 45.157 kb on + strand, within PP_0041 at 45.293 kb on + strand, within PP_0041 at 45.305 kb on + strand, within PP_0041 at 45.332 kb on - strand at 45.332 kb on - strand at 45.332 kb on - strand at 45.343 kb on + strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.344 kb on - strand at 45.473 kb on + strand at 45.474 kb on - strand at 45.525 kb on - strand at 45.525 kb on - strand at 45.595 kb on + strand at 45.602 kb on + strand at 45.602 kb on + strand at 45.646 kb on - strand at 45.815 kb on + strand, within PP_0042 at 45.815 kb on + strand, within PP_0042 at 45.815 kb on + strand, within PP_0042 at 45.816 kb on - strand, within PP_0042 at 45.828 kb on + strand, within PP_0042 at 45.829 kb on - strand, within PP_0042 at 45.868 kb on + strand, within PP_0042 at 45.868 kb on + strand, within PP_0042 at 45.869 kb on - strand, within PP_0042 at 45.881 kb on + strand, within PP_0042 at 45.882 kb on - strand, within PP_0042 at 45.882 kb on - strand, within PP_0042 at 45.962 kb on + strand, within PP_0042 at 45.963 kb on - strand, within PP_0042 at 46.089 kb on + strand at 46.090 kb on - strand at 46.214 kb on + strand at 46.215 kb on - strand at 46.219 kb on - strand at 46.268 kb on + strand at 46.268 kb on + strand at 46.268 kb on + strand at 46.283 kb on - strand at 46.525 kb on + strand at 46.526 kb on - strand at 46.526 kb on - strand at 46.779 kb on - strand, within PP_0043 at 47.023 kb on + strand, within PP_0043 at 47.024 kb on - strand, within PP_0043 at 47.024 kb on - strand, within PP_0043
Per-strain Table
Position Strand Gene LocusTag Fraction pH 9 remove 44,792 + PP_0041 0.63 -3.4 44,793 - PP_0041 0.63 +3.4 44,814 + +0.4 44,969 + PP_0041 0.72 +1.2 44,970 - PP_0041 0.72 +2.0 44,982 + PP_0041 0.73 -1.1 44,982 + PP_0041 0.73 -2.9 44,982 + PP_0041 0.73 +3.9 44,982 + PP_0041 0.73 -0.5 44,983 - PP_0041 0.73 -0.5 44,983 - PP_0041 0.73 -2.0 44,983 - PP_0041 0.73 -1.0 44,983 - PP_0041 0.73 +0.7 44,988 + PP_0041 0.73 +0.8 44,989 - PP_0041 0.73 -0.6 45,090 + PP_0041 0.78 -3.9 45,091 - PP_0041 0.78 +0.8 45,157 + PP_0041 0.82 -2.6 45,293 + PP_0041 0.88 +0.7 45,305 + PP_0041 0.89 +0.4 45,332 - -0.2 45,332 - +1.7 45,332 - -0.7 45,343 + +0.6 45,344 - -2.0 45,344 - +0.4 45,344 - +1.1 45,344 - -3.5 45,473 + +0.0 45,474 - -2.9 45,525 - -1.4 45,525 - +3.4 45,595 + -0.4 45,602 + -1.9 45,602 + +0.2 45,646 - +0.4 45,815 + PP_0042 0.27 -3.3 45,815 + PP_0042 0.27 -0.3 45,815 + PP_0042 0.27 +1.4 45,816 - PP_0042 0.27 -1.9 45,828 + PP_0042 0.31 -0.2 45,829 - PP_0042 0.31 -1.4 45,868 + PP_0042 0.44 -2.3 45,868 + PP_0042 0.44 -2.9 45,869 - PP_0042 0.44 -2.3 45,881 + PP_0042 0.48 -0.1 45,882 - PP_0042 0.48 +0.4 45,882 - PP_0042 0.48 -1.2 45,962 + PP_0042 0.73 +0.4 45,963 - PP_0042 0.73 -2.2 46,089 + -1.9 46,090 - -3.1 46,214 + -1.0 46,215 - -1.4 46,219 - -0.0 46,268 + +3.9 46,268 + -2.4 46,268 + -1.5 46,283 - +1.1 46,525 + -2.0 46,526 - -2.6 46,526 - -1.9 46,779 - PP_0043 0.18 +1.3 47,023 + PP_0043 0.26 -0.6 47,024 - PP_0043 0.26 +0.4 47,024 - PP_0043 0.26 -3.4
Or see this region's nucleotide sequence