Strain Fitness in Pseudomonas putida KT2440 around PP_t62

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
2,419,737	+		PP_2120	0.53	+0.8
2,419,782	+		PP_2120	0.56	+1.9
2,419,793	+		PP_2120	0.57	-0.5
2,419,794	-		PP_2120	0.57	-0.2
2,420,192	+		PP_2120	0.80	+0.5
2,420,192	+		PP_2120	0.80	+0.8
2,420,193	-		PP_2120	0.81	-0.7
2,420,295	+		PP_2120	0.87	+1.5
2,420,295	+		PP_2120	0.87	+0.4
2,420,296	-		PP_2120	0.87	-1.0
2,420,296	-		PP_2120	0.87	-0.7
2,420,296	-		PP_2120	0.87	+1.2
2,420,442	+				-3.6
2,420,443	-				-0.4
2,420,545	+				+0.2
2,420,545	+				-1.5
2,420,546	-				+0.5
2,420,751	+				-3.4
2,420,751	+				+0.5
2,420,752	-				-0.2
2,420,854	+		PP_2121	0.33	-2.4
2,420,855	-		PP_2121	0.33	+2.8
2,420,855	-		PP_2121	0.33	+2.4
2,420,875	+		PP_2121	0.42	+0.8
2,420,922	-		PP_2121	0.64	+3.8
2,421,028	+				+3.1
2,421,029	-				-0.9
2,421,029	-				+1.8
2,421,029	-				+0.8
2,421,029	-				-0.6
2,421,029	-				-3.8
2,421,040	-				+0.5
2,421,040	-				+1.5
2,421,081	+				+0.8
2,421,151	+				+2.4
2,421,151	+				+0.8
2,421,152	-				-0.1
2,421,152	-				+0.1
2,421,154	-				-0.1
2,421,154	-				-0.3
2,421,258	+		PP_2122	0.13	+0.4
2,421,258	+		PP_2122	0.13	+1.8
2,421,258	+		PP_2122	0.13	+0.8
2,421,355	+		PP_2122	0.31	+1.2
2,421,356	-		PP_2122	0.31	-0.9
2,421,435	+		PP_2122	0.45	-2.5
2,421,488	+		PP_2122	0.55	-2.9