Strain Fitness in Pseudomonas putida KT2440 around PP_5250

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
5,991,088	-		PP_5249	0.21	+0.8
5,991,088	-		PP_5249	0.21	+0.8
5,991,090	+		PP_5249	0.21	-0.6
5,991,090	+		PP_5249	0.21	+1.5
5,991,090	+		PP_5249	0.21	-2.4
5,991,091	-		PP_5249	0.21	-0.8
5,991,234	+		PP_5249	0.37	-0.9
5,991,234	+		PP_5249	0.37	+0.8
5,991,235	-		PP_5249	0.37	+0.2
5,991,235	-		PP_5249	0.37	+2.6
5,991,246	+		PP_5249	0.38	+1.3
5,991,247	-		PP_5249	0.39	-1.8
5,991,247	-		PP_5249	0.39	-2.5
5,991,276	-		PP_5249	0.42	+1.0
5,991,411	+				-0.2
5,991,412	-		PP_5249	0.57	-1.2
5,991,495	+		PP_5249	0.66	+1.1
5,991,551	+		PP_5249	0.72	-1.5
5,991,551	+		PP_5249	0.72	+0.8
5,991,552	-		PP_5249	0.72	-3.5
5,991,552	-		PP_5249	0.72	-0.0
5,991,858	+				-0.3
5,991,858	+				+0.6
5,991,858	+				-0.4
5,991,859	-				+0.4
5,991,859	-				+0.5
5,991,859	-				-3.4
5,991,952	+				-1.2
5,991,952	+				-2.2
5,991,952	+				+0.2
5,991,952	+				+3.4
5,991,953	-				+2.4
5,991,953	-				-2.4
5,991,968	+				+1.2
5,991,969	-				-2.0
5,992,118	+				-2.4
5,992,119	-				-0.3
5,992,377	+		PP_5250	0.29	+0.0
5,992,377	+		PP_5250	0.29	+0.8
5,992,377	+		PP_5250	0.29	+0.8
5,992,378	-		PP_5250	0.29	-1.2
5,992,460	+		PP_5250	0.36	-1.8
5,992,460	+		PP_5250	0.36	-0.5
5,992,658	+		PP_5250	0.51	+0.3
5,992,658	+		PP_5250	0.51	-1.2
5,992,658	+		PP_5250	0.51	+4.0
5,992,658	+		PP_5250	0.51	+0.8
5,992,659	-		PP_5250	0.51	-0.4
5,992,659	-		PP_5250	0.51	+1.7
5,992,694	+		PP_5250	0.54	+1.2
5,992,695	-		PP_5250	0.54	+1.1
5,992,695	-		PP_5250	0.54	+1.8
5,992,745	+		PP_5250	0.58	+1.0
5,992,746	-		PP_5250	0.58	-0.1
5,992,800	-		PP_5250	0.63	+3.6
5,992,818	-		PP_5250	0.64	+1.8
5,992,818	-		PP_5250	0.64	-0.8
5,992,818	-		PP_5250	0.64	+0.0
5,992,818	-		PP_5250	0.64	+0.8
5,992,818	-		PP_5250	0.64	-1.8
5,992,851	-		PP_5250	0.67	+0.9
5,992,904	+		PP_5250	0.71	+0.8
5,992,904	+		PP_5250	0.71	+0.9
5,992,905	-		PP_5250	0.71	+0.0
5,992,905	-		PP_5250	0.71	+0.8
5,992,925	+		PP_5250	0.72	+2.7
5,992,925	+		PP_5250	0.72	+1.5
5,992,970	+		PP_5250	0.76	-0.7
5,992,970	+		PP_5250	0.76	+1.3
5,992,971	-		PP_5250	0.76	+0.9
5,993,025	-		PP_5250	0.80	-0.2
5,993,076	-		PP_5250	0.84	-0.0
5,993,076	-		PP_5250	0.84	-1.8
5,993,132	+		PP_5250	0.89	+0.0
5,993,132	+		PP_5250	0.89	-1.9
5,993,132	+		PP_5250	0.89	+5.0
5,993,133	-		PP_5250	0.89	-0.4
5,993,234	+				+1.4
5,993,235	-				-0.6
5,993,235	-				-2.5
5,993,235	-				-0.8
5,993,312	+				+1.8
5,993,443	+		PP_5251	0.11	-1.3
5,993,517	+		PP_5251	0.15	-1.5
5,993,518	-		PP_5251	0.15	-0.4
5,993,636	+		PP_5251	0.23	-0.4
5,993,999	+		PP_5251	0.45	+0.8
5,994,080	+		PP_5251	0.50	-0.7
5,994,152	-		PP_5251	0.55	+0.8
5,994,168	+		PP_5251	0.56	-0.8
5,994,168	+		PP_5251	0.56	+2.6
5,994,169	-		PP_5251	0.56	-0.9
5,994,169	-		PP_5251	0.56	-0.8
5,994,169	-		PP_5251	0.56	-0.2
5,994,169	-		PP_5251	0.56	+0.9
5,994,169	-		PP_5251	0.56	+1.0
5,994,209	-		PP_5251	0.58	+0.5
5,994,211	-		PP_5251	0.59	-0.2
5,994,211	-		PP_5251	0.59	-0.2