Strain Fitness in Pseudomonas putida KT2440 around PP_5188

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
5,917,567	+		PP_5187	0.46	-0.9
5,917,568	-		PP_5187	0.46	-0.9
5,917,568	-		PP_5187	0.46	-1.2
5,917,568	-		PP_5187	0.46	-0.8
5,917,624	+		PP_5187	0.50	-0.2
5,917,910	+		PP_5187	0.71	-0.2
5,917,910	+		PP_5187	0.71	-0.7
5,918,072	-		PP_5187	0.83	+1.1
5,918,113	-		PP_5187	0.86	-0.6
5,918,182	+				+1.8
5,918,334	+				-1.8
5,918,346	+				-1.8
5,918,346	+				+0.2
5,918,347	-				-0.7
5,918,347	-				-1.0
5,918,379	-				-0.3
5,918,425	+				+1.4
5,918,518	-		PP_5188	0.24	-1.7
5,918,577	+		PP_5188	0.37	-0.2
5,918,577	+		PP_5188	0.37	-1.2
5,918,577	+		PP_5188	0.37	-1.8
5,918,577	+		PP_5188	0.37	-0.9
5,918,578	-		PP_5188	0.37	-0.9
5,918,578	-		PP_5188	0.37	-2.4
5,918,578	-		PP_5188	0.37	+1.0
5,918,578	-		PP_5188	0.37	-0.0
5,918,578	-		PP_5188	0.37	+0.6
5,918,578	-		PP_5188	0.37	-3.6
5,918,622	+		PP_5188	0.46	-0.8
5,918,877	-				+1.6
5,918,906	+				+1.4
5,918,998	+				-1.6
5,918,998	+				+1.8
5,918,998	+				+0.3
5,918,998	+				-0.1
5,918,998	+				-1.6
5,918,998	+				+0.2
5,918,999	-				+1.5
5,919,001	+				+1.3
5,919,653	-		PP_5190	0.14	+0.8
5,919,653	-		PP_5190	0.14	-2.6
5,919,653	-		PP_5190	0.14	-1.8
5,919,845	+		PP_5190	0.26	-1.0