Strain Fitness in Pseudomonas putida KT2440 around PP_5166

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
5,890,811	+				-0.3
5,890,811	+				+0.4
5,890,811	+				+3.1
5,890,812	-				-3.9
5,890,812	-				+2.8
5,890,812	-				-0.0
5,890,812	-				+2.3
5,890,812	-				-0.2
5,890,812	-				-3.9
5,890,848	-				-2.9
5,890,860	+				-1.1
5,890,860	+				-0.8
5,890,968	+		PP_5165	0.17	+1.1
5,890,968	+		PP_5165	0.17	+0.4
5,890,969	-		PP_5165	0.17	+2.3
5,891,034	+		PP_5165	0.26	-0.9
5,891,034	+		PP_5165	0.26	-0.2
5,891,035	-		PP_5165	0.26	+2.8
5,891,176	+		PP_5165	0.44	-0.5
5,891,177	-		PP_5165	0.44	+2.3
5,891,177	-		PP_5165	0.44	+0.9
5,891,309	+		PP_5165	0.61	-0.8
5,891,309	+		PP_5165	0.61	-2.0
5,891,309	+		PP_5165	0.61	-2.6
5,891,309	+		PP_5165	0.61	-0.2
5,891,310	-		PP_5165	0.61	+0.1
5,891,310	-		PP_5165	0.61	-0.6
5,891,310	-		PP_5165	0.61	+2.1
5,891,315	+		PP_5165	0.61	-0.9
5,891,316	-		PP_5165	0.62	-2.1
5,891,316	-		PP_5165	0.62	+1.5
5,891,370	+				-0.8
5,891,701	+				+1.1
5,891,739	-				+0.8
5,891,739	-				-0.6
5,891,747	-				+0.8
5,891,764	-				-1.0
5,891,767	+				+0.8
5,891,794	+				+0.0
5,891,794	+				-0.7
5,891,794	+				+3.9
5,891,794	+				-4.0
5,891,794	+				-0.2
5,891,794	+				-0.0
5,891,794	+				-0.8
5,891,794	+				+0.8
5,891,795	-				-1.3
5,891,795	-				+1.8
5,891,795	-				-0.1
5,891,974	+		PP_5166	0.22	+1.3
5,891,974	+		PP_5166	0.22	+3.9
5,891,974	+		PP_5166	0.22	+2.9
5,891,975	-		PP_5166	0.22	+0.9
5,891,975	-		PP_5166	0.22	+0.2
5,891,989	+		PP_5166	0.24	+1.6
5,892,068	-		PP_5166	0.33	-0.0
5,892,250	+		PP_5166	0.55	-0.6
5,892,251	-		PP_5166	0.55	+2.4
5,892,324	-		PP_5166	0.64	-2.1
5,892,349	+		PP_5166	0.67	+0.8
5,892,350	-		PP_5166	0.67	-1.9
5,892,531	-		PP_5166	0.89	+1.4
5,892,591	+				+1.0
5,892,592	-				+1.0
5,892,679	+				+5.1
5,892,679	+				+0.7
5,892,735	-				-2.1
5,892,741	-				+2.1
5,892,840	-		PP_5167	0.26	+0.6
5,892,840	-		PP_5167	0.26	+0.1
5,893,006	+		PP_5167	0.55	+0.9
5,893,007	-		PP_5167	0.55	+1.3
5,893,248	-				+0.9
5,893,248	-				+0.0
5,893,284	+				-0.2
5,893,284	+				+2.3
5,893,308	+				+3.3
5,893,308	+				+0.2
5,893,308	+				-0.2
5,893,308	+				-0.1
5,893,308	+				+4.3
5,893,308	+				-2.4
5,893,308	+				+1.5
5,893,308	+				-2.3
5,893,308	+				+0.1
5,893,308	+				-2.1
5,893,308	+				+0.5
5,893,309	-				-0.5
5,893,309	-				+0.7
5,893,309	-				-1.7
5,893,309	-				+3.9
5,893,309	-				-2.1
5,893,309	-				-3.2
5,893,309	-				+1.6
5,893,309	-				+0.1
5,893,309	-				+3.7
5,893,309	-				-2.8
5,893,309	-				+3.9
5,893,309	-				+2.3
5,893,309	-				-2.2
5,893,309	-				-0.3
5,893,310	+				+2.0
5,893,310	+				+1.1
5,893,311	-				+0.9
5,893,311	-				+0.2
5,893,407	+				-0.0
5,893,407	+				+0.8
5,893,408	-				-0.7
5,893,408	-				-1.1
5,893,481	+				-2.0
5,893,481	+				+0.6
5,893,481	+				+0.7
5,893,481	+				+2.6
5,893,481	+				+2.7
5,893,481	+				+0.8
5,893,482	-				-0.6
5,893,482	-				-0.8
5,893,482	-				-1.3
5,893,482	-				+1.3
5,893,482	-				+1.2
5,893,482	-				+0.0
5,893,482	-				-0.2
5,893,485	+				-0.3
5,893,486	-				+3.3