Strain Fitness in Pseudomonas putida KT2440 around PP_5071

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
5,786,888	-		PP_5069	0.69	-0.9
5,786,910	+		PP_5069	0.74	+3.1
5,786,910	+		PP_5069	0.74	+0.8
5,786,910	+		PP_5069	0.74	-1.2
5,786,911	-		PP_5069	0.74	+1.8
5,786,911	-		PP_5069	0.74	+0.1
5,786,911	-		PP_5069	0.74	-0.8
5,786,911	-		PP_5069	0.74	+0.8
5,786,911	-		PP_5069	0.74	+0.7
5,786,911	-		PP_5069	0.74	-2.2
5,787,021	-				+0.8
5,787,146	+		PP_5070	0.16	-0.4
5,787,146	+		PP_5070	0.16	+1.1
5,787,146	+		PP_5070	0.16	-1.0
5,787,147	-		PP_5070	0.17	-0.2
5,787,415	-		PP_5070	0.51	-0.7
5,787,415	-		PP_5070	0.51	-2.0
5,787,422	+		PP_5070	0.52	+1.8
5,787,422	+		PP_5070	0.52	-2.9
5,787,551	+		PP_5070	0.69	+0.5
5,787,551	+		PP_5070	0.69	-0.9
5,787,552	-		PP_5070	0.69	-0.2
5,787,552	-		PP_5070	0.69	+2.4
5,787,552	-		PP_5070	0.69	+0.3
5,787,552	-		PP_5070	0.69	+0.8
5,787,555	+		PP_5070	0.69	-1.6
5,787,656	+		PP_5070	0.82	-2.0
5,787,807	+				+1.7
5,787,808	-				+1.4
5,787,825	+				-2.2
5,787,826	-				+1.0
5,787,826	-				+0.8
5,787,993	+		PP_5071	0.14	+4.4
5,787,993	+		PP_5071	0.14	-0.3
5,787,993	+		PP_5071	0.14	+0.6
5,787,994	-		PP_5071	0.14	-0.0
5,788,215	+		PP_5071	0.38	+0.9
5,788,215	+		PP_5071	0.38	+1.6
5,788,358	+		PP_5071	0.54	-0.3
5,788,358	+		PP_5071	0.54	-0.4
5,788,556	+		PP_5071	0.76	+1.4
5,788,557	-		PP_5071	0.76	+0.1
5,788,618	+		PP_5071	0.83	-2.4
5,788,618	+		PP_5071	0.83	+0.8
5,788,618	+		PP_5071	0.83	+0.1
5,788,746	+				-1.4
5,788,747	-				+2.4
5,788,747	-				-0.2
5,788,747	-				+1.1
5,788,841	+				-0.2
5,788,842	-				+0.3
5,789,018	+		PP_5072	0.14	+3.4
5,789,019	-		PP_5072	0.14	-1.0
5,789,025	+		PP_5072	0.14	+1.4
5,789,025	+		PP_5072	0.14	-0.2
5,789,026	-		PP_5072	0.14	-0.4
5,789,026	-		PP_5072	0.14	+0.8
5,789,026	-		PP_5072	0.14	+1.0
5,789,242	-		PP_5072	0.31	-2.0
5,789,303	+		PP_5072	0.36	+0.4
5,789,303	+		PP_5072	0.36	+0.8
5,789,303	+		PP_5072	0.36	-0.6
5,789,304	-		PP_5072	0.36	+1.5
5,789,304	-		PP_5072	0.36	-0.6
5,789,304	-		PP_5072	0.36	+0.3
5,789,304	-				+0.8
5,789,354	+		PP_5072	0.40	+0.3
5,789,354	+		PP_5072	0.40	-0.5
5,789,355	-		PP_5072	0.40	-0.8
5,789,406	+		PP_5072	0.44	+1.4
5,789,406	+		PP_5072	0.44	-2.2
5,789,406	+		PP_5072	0.44	+0.5
5,789,407	-		PP_5072	0.44	+0.8
5,789,407	-		PP_5072	0.44	-0.5
5,789,639	+		PP_5072	0.62	-0.1
5,789,640	-		PP_5072	0.62	-0.3
5,789,711	+		PP_5072	0.68	+0.5
5,789,711	+		PP_5072	0.68	-1.8
5,789,712	-		PP_5072	0.68	-0.4
5,789,722	+		PP_5072	0.69	+0.3
5,789,723	-		PP_5072	0.69	+3.8
5,789,726	+		PP_5072	0.69	-0.0
5,789,726	+		PP_5072	0.69	-0.7
5,789,726	+		PP_5072	0.69	+0.1
5,789,727	-		PP_5072	0.69	-0.9
5,789,727	-		PP_5072	0.69	-1.2
5,789,727	-		PP_5072	0.69	+0.2