Strain Fitness in Pseudomonas putida KT2440 around PP_4849

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
5,515,814	+		PP_4848	0.78	+1.7
5,515,815	-		PP_4848	0.78	+1.7
5,515,868	+		PP_4848	0.84	-0.6
5,515,869	-		PP_4848	0.84	+0.7
5,515,931	+				+1.0
5,515,931	+				+0.2
5,515,932	-				-0.5
5,515,932	-				+1.7
5,515,999	+				-0.6
5,516,006	+				-0.9
5,516,006	+				-0.7
5,516,007	-				+1.6
5,516,007	-				+0.2
5,516,007	-				-1.3
5,516,007	-				+2.3
5,516,009	+				-1.0
5,516,009	+				-0.5
5,516,010	-				-0.1
5,516,028	-				-0.2
5,516,028	-				-2.6
5,516,080	+				-3.5
5,516,080	+				+1.3
5,516,080	+				-0.9
5,516,080	+				-1.3
5,516,150	+				+1.2
5,516,150	+				+2.1
5,516,150	+				+0.5
5,516,151	-				+1.4
5,516,151	-				+3.5
5,516,151	-				+0.7
5,516,151	-				+0.7
5,516,151	-				+0.6
5,516,201	-				-0.3
5,516,355	+		PP_4849	0.13	-1.3
5,516,355	+		PP_4849	0.13	-1.3
5,516,676	+		PP_4849	0.38	-2.3
5,516,676	+		PP_4849	0.38	-2.6
5,516,677	-		PP_4849	0.38	+0.1
5,516,677	-		PP_4849	0.38	-0.7
5,516,703	+		PP_4849	0.40	+3.3
5,516,734	+		PP_4849	0.43	-2.1
5,516,910	+		PP_4849	0.57	-0.3
5,516,911	-		PP_4849	0.57	-0.3
5,516,952	+		PP_4849	0.60	+0.8
5,516,952	+		PP_4849	0.60	+0.3
5,516,953	-		PP_4849	0.60	-1.1
5,516,953	-		PP_4849	0.60	-1.3
5,516,995	-		PP_4849	0.63	+3.3
5,516,995	-		PP_4849	0.63	-0.9
5,517,034	-		PP_4849	0.66	-1.8
5,517,305	+		PP_4849	0.88	-0.3
5,517,398	+				-1.2
5,517,398	+				+0.9
5,517,399	-				+0.7
5,517,506	+				-2.3
5,517,506	+				+0.4
5,517,506	+				-0.4
5,517,506	+				-1.8
5,517,507	-				+0.1
5,517,507	-				+0.3
5,517,507	-				-0.6
5,517,507	-				+3.6
5,517,550	+				-1.6
5,517,551	-				-0.3
5,517,556	+				-1.5
5,517,556	+				-1.0
5,517,556	+				-0.3
5,517,556	+				-1.3
5,517,556	+				+1.7
5,517,556	+				-1.8
5,517,557	-				+1.1
5,517,557	-				+0.3
5,517,557	-				+0.9
5,517,557	-				-2.6
5,517,557	-				+2.2
5,517,557	-				-1.8
5,517,557	-				+0.3
5,517,557	-				-0.0
5,517,557	-				+1.5
5,517,557	-				-3.5
5,517,559	+				+0.7
5,517,559	+				-0.4
5,517,559	+				-0.9
5,517,559	+				-0.5
5,517,559	+				+0.6
5,517,559	+				-3.4
5,517,559	+				-3.3
5,517,559	+				+3.7
5,517,559	+				-1.4
5,517,560	-				-4.0
5,517,560	-				+0.2
5,517,560	-				-2.8
5,517,560	-				-0.3
5,517,560	-				-0.3
5,517,560	-				+0.7
5,517,560	-				+0.2
5,517,560	-				+2.7
5,517,606	+				-1.1
5,517,607	-				+0.3
5,517,679	+		PP_4850	0.16	+0.2
5,517,679	+		PP_4850	0.16	+0.1
5,517,849	+		PP_4850	0.31	-2.6
5,517,850	-		PP_4850	0.32	+1.2
5,517,850	-		PP_4850	0.32	+0.6
5,517,850	-		PP_4850	0.32	+0.6
5,518,171	+		PP_4850	0.62	+0.7
5,518,171	+		PP_4850	0.62	+0.6