Strain Fitness in Pseudomonas putida KT2440 around PP_4752

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
5,406,527	+		PP_4750	0.87	+0.8
5,406,572	+				-0.1
5,406,573	-				-0.0
5,406,777	+		PP_4751	0.21	+0.8
5,406,777	+		PP_4751	0.21	+0.2
5,406,778	-		PP_4751	0.21	+0.7
5,406,904	-		PP_4751	0.37	-2.0
5,406,938	+		PP_4751	0.41	-0.2
5,406,939	-		PP_4751	0.41	+1.0
5,407,095	+		PP_4751	0.60	+1.3
5,407,095	+		PP_4751	0.60	-0.6
5,407,095	+		PP_4751	0.60	+0.8
5,407,096	-		PP_4751	0.60	-1.3
5,407,096	-		PP_4751	0.60	+0.7
5,407,096	-		PP_4751	0.60	+3.0
5,407,224	+		PP_4751	0.76	-0.5
5,407,323	+		PP_4751	0.88	-1.2
5,407,542	+				-2.0
5,407,543	-				+0.5
5,407,615	-		PP_4752	0.14	-1.4
5,407,629	+		PP_4752	0.15	+1.0
5,407,668	+		PP_4752	0.18	-2.3
5,407,668	+		PP_4752	0.18	-1.4
5,407,669	-		PP_4752	0.18	-3.8
5,407,669	-		PP_4752	0.18	+0.9
5,408,328	+		PP_4752	0.69	-0.2
5,408,328	+		PP_4752	0.69	-2.0
5,408,329	-		PP_4752	0.69	+2.8
5,408,329	-		PP_4752	0.69	-0.4
5,408,443	-		PP_4752	0.77	+1.5
5,408,443	-		PP_4752	0.77	-1.9
5,408,443	-		PP_4752	0.77	-0.5
5,408,479	+		PP_4752	0.80	-3.4
5,408,479	+		PP_4752	0.80	-0.4
5,408,536	-		PP_4752	0.85	-0.7
5,408,611	-				-2.4
5,408,611	-				-0.5
5,408,777	+				-1.6
5,408,782	-				-2.0
5,408,782	-				+0.1
5,408,782	-				+1.6
5,408,782	-				-0.8
5,408,792	+				+0.2
5,408,793	-				-0.1
5,408,793	-				-0.1
5,408,814	+				+2.2
5,408,814	+				+2.3
5,408,815	-				-1.6
5,408,815	-				+0.7
5,408,841	-				-2.9
5,408,870	+				+0.7
5,408,870	+				-0.8
5,408,870	+				+2.3
5,408,870	+				+4.6
5,408,871	-				+1.8
5,408,871	-				-0.2
5,408,871	-				-0.1
5,408,984	+				+0.6
5,408,985	-				-0.2
5,408,985	-				+0.1
5,409,030	-				-0.3
5,409,030	-				+0.3
5,409,104	+		PP_4753	0.13	+1.8
5,409,164	+		PP_4753	0.16	+2.0
5,409,165	-		PP_4753	0.16	-0.5
5,409,165	-		PP_4753	0.16	-1.3
5,409,165	-		PP_4753	0.16	-1.2
5,409,174	+		PP_4753	0.16	-0.4
5,409,174	+		PP_4753	0.16	-2.0
5,409,174	+		PP_4753	0.16	+0.8
5,409,197	-		PP_4753	0.18	+0.5
5,409,209	+		PP_4753	0.18	-2.9
5,409,209	+		PP_4753	0.18	+0.2
5,409,210	-		PP_4753	0.18	+0.6
5,409,210	-		PP_4753	0.18	-1.1
5,409,339	-		PP_4753	0.25	-0.6