Experiment: pH 8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4704 and PP_4705 are separated by 81 nucleotides PP_4705 and PP_4706 are separated by 60 nucleotides PP_4706 and PP_4707 are separated by 75 nucleotides PP_4707 and PP_4708 are separated by 263 nucleotides
PP_4704: PP_4704 - conserved protein of unknown function, at 5,347,527 to 5,350,463
_4704
PP_4705: PP_4705 - Glyoxalase, at 5,350,545 to 5,350,958
_4705
PP_4706: PP_4706 - conserved protein of unknown function, at 5,351,019 to 5,351,321
_4706
PP_4707: PP_4707 - OsmY-related protein, at 5,351,397 to 5,351,747
_4707
PP_4708: PP_4708 - Polyribonucleotide nucleotidyltransferase, at 5,352,011 to 5,354,116
_4708
Position (kb) 5351
5352 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5350.092 kb on + strand, within PP_4704 at 5350.093 kb on - strand, within PP_4704 at 5350.188 kb on + strand at 5350.189 kb on - strand at 5350.189 kb on - strand at 5350.347 kb on + strand at 5350.347 kb on + strand at 5350.348 kb on - strand at 5350.386 kb on + strand at 5350.387 kb on - strand at 5350.387 kb on - strand at 5350.398 kb on - strand at 5350.462 kb on - strand at 5350.501 kb on + strand at 5350.502 kb on - strand at 5350.579 kb on + strand at 5350.579 kb on + strand at 5350.687 kb on + strand, within PP_4705 at 5350.688 kb on - strand, within PP_4705 at 5350.693 kb on + strand, within PP_4705 at 5350.694 kb on - strand, within PP_4705 at 5350.735 kb on + strand, within PP_4705 at 5350.813 kb on + strand, within PP_4705 at 5350.814 kb on - strand, within PP_4705 at 5350.867 kb on + strand, within PP_4705 at 5351.024 kb on + strand at 5351.025 kb on - strand at 5351.035 kb on + strand at 5351.172 kb on + strand, within PP_4706 at 5351.172 kb on + strand, within PP_4706 at 5351.173 kb on - strand, within PP_4706 at 5351.173 kb on - strand, within PP_4706 at 5351.173 kb on - strand, within PP_4706 at 5351.179 kb on - strand, within PP_4706 at 5351.205 kb on + strand, within PP_4706 at 5351.205 kb on + strand, within PP_4706 at 5351.206 kb on - strand, within PP_4706 at 5351.206 kb on - strand, within PP_4706 at 5351.316 kb on + strand at 5351.317 kb on - strand at 5351.317 kb on - strand at 5351.317 kb on - strand at 5351.317 kb on - strand at 5351.398 kb on + strand at 5351.424 kb on + strand at 5351.425 kb on - strand at 5351.425 kb on - strand at 5351.425 kb on - strand at 5351.454 kb on - strand, within PP_4707 at 5351.454 kb on - strand, within PP_4707 at 5351.591 kb on + strand, within PP_4707 at 5351.721 kb on - strand at 5351.783 kb on + strand at 5351.800 kb on + strand at 5351.800 kb on + strand at 5351.801 kb on - strand at 5351.808 kb on + strand at 5352.012 kb on + strand at 5352.240 kb on + strand at 5352.240 kb on + strand, within PP_4708 at 5352.240 kb on + strand, within PP_4708 at 5352.241 kb on - strand, within PP_4708
Per-strain Table
Position Strand Gene LocusTag Fraction pH 8 remove 5,350,092 + PP_4704 0.87 -3.2 5,350,093 - PP_4704 0.87 -0.0 5,350,188 + -1.7 5,350,189 - -1.0 5,350,189 - -0.8 5,350,347 + -0.8 5,350,347 + -3.8 5,350,348 - -0.1 5,350,386 + +1.3 5,350,387 - -3.2 5,350,387 - -1.3 5,350,398 - -0.8 5,350,462 - -0.7 5,350,501 + -0.4 5,350,502 - -0.8 5,350,579 + +0.0 5,350,579 + +0.0 5,350,687 + PP_4705 0.34 +4.3 5,350,688 - PP_4705 0.35 -0.1 5,350,693 + PP_4705 0.36 +0.9 5,350,694 - PP_4705 0.36 -2.2 5,350,735 + PP_4705 0.46 -0.2 5,350,813 + PP_4705 0.65 +0.5 5,350,814 - PP_4705 0.65 -2.4 5,350,867 + PP_4705 0.78 +0.2 5,351,024 + -0.6 5,351,025 - -0.7 5,351,035 + +2.6 5,351,172 + PP_4706 0.50 -1.6 5,351,172 + PP_4706 0.50 +1.2 5,351,173 - PP_4706 0.51 +2.6 5,351,173 - PP_4706 0.51 +1.8 5,351,173 - PP_4706 0.51 +0.8 5,351,179 - PP_4706 0.53 +0.3 5,351,205 + PP_4706 0.61 -0.2 5,351,205 + PP_4706 0.61 +1.5 5,351,206 - PP_4706 0.62 +0.3 5,351,206 - PP_4706 0.62 +0.6 5,351,316 + -0.8 5,351,317 - +0.6 5,351,317 - +3.1 5,351,317 - +0.4 5,351,317 - -1.2 5,351,398 + +1.8 5,351,424 + -1.3 5,351,425 - -0.8 5,351,425 - -0.6 5,351,425 - -2.6 5,351,454 - PP_4707 0.16 -3.5 5,351,454 - PP_4707 0.16 -0.3 5,351,591 + PP_4707 0.55 +0.8 5,351,721 - -3.3 5,351,783 + +0.8 5,351,800 + +0.2 5,351,800 + +1.8 5,351,801 - +0.8 5,351,808 + -0.8 5,352,012 + +0.8 5,352,240 + +0.8 5,352,240 + PP_4708 0.11 -2.4 5,352,240 + PP_4708 0.11 -2.6 5,352,241 - PP_4708 0.11 +0.8
Or see this region's nucleotide sequence