Strain Fitness in Pseudomonas putida KT2440 around PP_4511

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
5,123,277	-				+0.8
5,123,293	+				+0.0
5,123,293	+				-1.8
5,123,294	-				-1.3
5,123,335	+				+3.4
5,123,384	-				+0.1
5,123,495	+		PP_4510	0.20	-1.5
5,123,495	+		PP_4510	0.20	-0.2
5,123,496	-		PP_4510	0.20	+0.8
5,123,496	-		PP_4510	0.20	-0.1
5,123,496	-		PP_4510	0.20	-0.9
5,123,602	+		PP_4510	0.34	-1.0
5,123,621	-		PP_4510	0.36	-2.6
5,123,626	+		PP_4510	0.37	-0.8
5,123,626	+		PP_4510	0.37	+0.8
5,123,626	+		PP_4510	0.37	-1.5
5,123,684	-		PP_4510	0.44	-0.6
5,123,684	-		PP_4510	0.44	+0.8
5,123,800	-		PP_4510	0.58	-1.6
5,123,869	+		PP_4510	0.67	+0.1
5,123,869	+		PP_4510	0.67	+0.4
5,123,870	-		PP_4510	0.67	+2.4
5,123,870	-		PP_4510	0.67	+0.2
5,123,870	-		PP_4510	0.67	+0.5
5,123,941	+		PP_4510	0.76	+2.6
5,123,941	+		PP_4510	0.76	-1.5
5,123,942	-		PP_4510	0.76	+0.5
5,123,970	+		PP_4510	0.80	-0.2
5,123,970	+		PP_4510	0.80	+0.2
5,123,970	+		PP_4510	0.80	-0.8
5,123,970	+		PP_4510	0.80	-0.4
5,123,970	+		PP_4510	0.80	+2.1
5,123,970	+		PP_4510	0.80	+1.5
5,123,970	+		PP_4510	0.80	+1.0
5,123,970	+		PP_4510	0.80	-3.0
5,123,971	-		PP_4510	0.80	-0.4
5,123,971	-		PP_4510	0.80	-1.3
5,123,971	-		PP_4510	0.80	+0.8
5,123,971	-		PP_4510	0.80	-0.3
5,123,971	-		PP_4510	0.80	+0.8
5,123,971	-				+2.5
5,123,971	-		PP_4510	0.80	+0.8
5,123,971	-		PP_4510	0.80	+2.7
5,123,971	-		PP_4510	0.80	-3.3
5,123,971	-		PP_4510	0.80	-1.3
5,123,989	+		PP_4510	0.82	-0.8
5,123,989	+		PP_4510	0.82	-1.3
5,123,989	+		PP_4510	0.82	+0.4
5,123,990	-		PP_4510	0.82	+0.8
5,124,084	-				+0.0
5,124,315	+				+0.1
5,124,560	+		PP_4511	0.39	+0.2
5,124,713	-		PP_4511	0.59	+0.8
5,124,733	-		PP_4511	0.62	-1.9
5,124,819	+		PP_4511	0.73	+0.3
5,124,850	+		PP_4511	0.77	-0.2
5,124,850	+		PP_4511	0.77	-1.8
5,124,850	+		PP_4511	0.77	-3.0
5,124,850	+		PP_4511	0.77	+0.6
5,124,850	+		PP_4511	0.77	-0.3
5,124,851	-		PP_4511	0.77	-1.9
5,124,937	+		PP_4511	0.88	-1.8
5,124,937	+		PP_4511	0.88	-0.8
5,124,938	-		PP_4511	0.88	+1.2
5,124,938	-		PP_4511	0.88	+1.8
5,124,939	+		PP_4511	0.89	+1.1
5,124,939	+		PP_4511	0.89	-0.2
5,124,939	+		PP_4511	0.89	-3.3
5,124,939	+		PP_4511	0.89	-1.8
5,124,939	+		PP_4511	0.89	-1.3
5,124,940	-		PP_4511	0.89	-0.4
5,124,940	-		PP_4511	0.89	-0.3
5,124,940	-		PP_4511	0.89	+2.4
5,124,940	-		PP_4511	0.89	-0.6
5,124,940	-		PP_4511	0.89	-1.7
5,124,940	-		PP_4511	0.89	-0.8
5,124,987	+				-1.6
5,124,987	+				-1.5
5,124,988	-				+1.8
5,125,107	+				-0.2
5,125,108	-				-0.6
5,125,108	-				-1.4
5,125,144	+				-3.0
5,125,144	+				-0.9
5,125,145	-				-0.3
5,125,184	-				-2.0
5,125,184	-				+1.4
5,125,483	-		PP_4512	0.31	+2.9
5,125,483	-		PP_4512	0.31	+1.4
5,125,558	+		PP_4512	0.39	-0.1
5,125,608	+		PP_4512	0.45	-4.4
5,125,609	-		PP_4512	0.45	-1.4
5,125,738	-		PP_4512	0.59	+0.8
5,125,946	+		PP_4512	0.83	-3.7
5,125,947	-		PP_4512	0.83	-1.0
5,125,951	+		PP_4512	0.83	-2.6
5,125,952	-		PP_4512	0.84	+1.1