Strain Fitness in Pseudomonas putida KT2440 around PP_4450

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
5,045,043	-		PP_5681	0.34	+0.5
5,045,044	+		PP_5681	0.35	+1.5
5,045,045	-		PP_5681	0.35	-1.0
5,045,045	-		PP_5681	0.35	+2.1
5,045,045	-		PP_5681	0.35	-0.8
5,045,045	-		PP_5681	0.35	-1.4
5,045,130	-		PP_5681	0.71	+1.8
5,045,259	+				+0.6
5,045,293	+				+3.4
5,045,298	+				-0.6
5,045,312	-				-0.4
5,045,312	-				-0.2
5,045,325	-				+0.0
5,045,329	+				+2.1
5,045,330	-				+0.3
5,045,381	-				+1.5
5,045,393	+				+2.8
5,045,393	+				-0.1
5,045,393	+				-0.8
5,045,475	+		PP_4449	0.38	-2.2
5,045,476	-		PP_4449	0.38	-0.4
5,045,530	+		PP_4449	0.59	+0.4
5,045,531	-		PP_4449	0.60	-0.3
5,045,570	+		PP_4449	0.75	+0.4
5,045,570	+		PP_4449	0.75	-1.7
5,045,625	+				+0.5
5,045,625	+				-0.1
5,045,626	-				-0.6
5,045,626	-				-1.4
5,045,702	+				-1.4
5,045,727	+				-0.4
5,045,728	-				-0.3
5,045,728	-				-0.4
5,045,735	+				+0.3
5,045,735	+				+0.8
5,045,736	-				+0.6
5,045,761	+		PP_5682	0.17	-2.1
5,045,776	+		PP_5682	0.24	-1.4
5,045,834	+		PP_5682	0.51	-0.7
5,045,835	-		PP_5682	0.52	+2.4
5,045,835	-		PP_5682	0.52	-2.7
5,045,860	-		PP_5682	0.64	+0.3
5,045,866	+		PP_5682	0.67	+0.7
5,045,866	+		PP_5682	0.67	+0.4
5,045,867	-		PP_5682	0.67	-0.3
5,045,867	-		PP_5682	0.67	+1.2
5,045,867	-		PP_5682	0.67	-0.4
5,045,889	+		PP_5682	0.78	+0.8
5,045,890	-		PP_5682	0.78	+2.4
5,045,890	-		PP_5682	0.78	-1.3
5,045,890	-		PP_5682	0.78	-0.2
5,045,910	-		PP_5682	0.88	-3.0
5,045,996	+				-1.0
5,045,997	-				-3.3
5,046,004	-				+1.5
5,046,018	+				+0.0
5,046,019	-				+1.0
5,046,019	-				-2.9
5,046,019	-				-2.9
5,046,019	-				+0.2
5,046,019	-				-1.4
5,046,038	-				-0.8
5,046,053	+				+0.4
5,046,053	+				+1.4
5,046,054	-				+3.6
5,046,175	-		PP_4450	0.21	-2.1
5,046,292	+		PP_4450	0.40	-0.0
5,046,292	+		PP_4450	0.40	-1.9
5,046,293	-		PP_4450	0.40	-0.5
5,046,293	-		PP_4450	0.40	-0.1
5,046,293	-		PP_4450	0.40	-2.2
5,046,355	+		PP_4450	0.50	+1.2
5,046,356	-		PP_4450	0.50	-1.3
5,046,356	-		PP_4450	0.50	-1.2
5,046,356	-		PP_4450	0.50	-1.4
5,046,420	-		PP_4450	0.60	+0.8
5,046,471	+		PP_4450	0.68	+1.2
5,046,471	+		PP_4450	0.68	-1.2
5,046,472	-		PP_4450	0.68	-1.3
5,046,555	+		PP_4450	0.82	-0.0
5,046,555	+		PP_4450	0.82	-2.2
5,046,556	-		PP_4450	0.82	-0.2
5,046,556	-		PP_4450	0.82	-2.3
5,046,556	-		PP_4450	0.82	+1.4
5,046,574	+		PP_4450	0.85	-0.2
5,046,574	+		PP_4450	0.85	-2.7
5,046,574	+		PP_4450	0.85	-2.8
5,046,613	+				+0.8
5,046,613	+				+0.4
5,046,617	+				+3.8
5,046,618	-				-2.1
5,046,618	-				+0.7
5,046,664	+				-0.7
5,046,664	+				+0.2
5,046,675	+				-1.7
5,046,676	-				+1.2
5,046,676	-				-0.4
5,046,676	-				+0.8
5,046,686	+				-0.5
5,046,686	+				+1.0
5,046,719	-				-0.4
5,046,752	-				-0.2
5,046,759	+				-1.0
5,046,760	-				-1.2
5,046,760	-				+0.8
5,046,760	-				+4.1
5,046,760	-				+0.6
5,046,819	+		PP_5683	0.15	+0.2
5,046,820	-		PP_5683	0.16	-0.9
5,046,820	-		PP_5683	0.16	-0.5
5,046,820	-		PP_5683	0.16	-2.9
5,046,857	+		PP_5683	0.31	-1.0
5,046,857	+		PP_5683	0.31	+0.1
5,046,867	+		PP_5683	0.35	-0.4
5,046,867	+		PP_5683	0.35	-0.9
5,046,891	+		PP_5683	0.46	-1.3
5,046,970	+		PP_5683	0.79	+0.8
5,046,970	+		PP_5683	0.79	-0.4
5,046,970	+		PP_5683	0.79	+1.2
5,046,970	+		PP_5683	0.79	+2.5
5,046,970	+		PP_5683	0.79	-1.1
5,046,970	+		PP_5683	0.79	-1.3
5,046,970	+		PP_5683	0.79	-1.8
5,046,970	+		PP_5683	0.79	+0.3
5,046,971	-		PP_5683	0.79	-1.1
5,046,971	-		PP_5683	0.79	+1.8
5,046,971	-		PP_5683	0.79	+0.8
5,046,971	-		PP_5683	0.79	-0.7
5,046,974	+				+0.8
5,046,974	+		PP_5683	0.81	-0.1
5,046,974	+		PP_5683	0.81	+0.3
5,046,974	+		PP_5683	0.81	-1.5
5,046,975	-		PP_5683	0.81	+1.4
5,046,975	-		PP_5683	0.81	-1.3
5,047,017	+				+1.4
5,047,017	+				-0.1
5,047,018	-				+0.7
5,047,018	-				-0.8
5,047,018	-				-1.9
5,047,139	-				+0.7
5,047,169	+				-0.2
5,047,169	+				-1.6
5,047,169	+				-0.3
5,047,170	-				-0.0
5,047,170	-				-0.7
5,047,223	+				+1.1
5,047,223	+				+0.5
5,047,223	+				+0.5
5,047,223	+				-1.5
5,047,223	+				+0.4
5,047,224	-				+0.9
5,047,224	-				+0.6
5,047,224	-				-1.7
5,047,224	-				-3.9
5,047,224	-				+0.2
5,047,253	+				-0.2
5,047,357	+				+1.7
5,047,357	+				-0.8
5,047,358	-				+0.2
5,047,358	-				+0.3
5,047,414	+				+0.5
5,047,433	+				-2.7
5,047,433	+				-1.0
5,047,433	+				-0.0
5,047,433	+				+0.3
5,047,433	+				+1.1
5,047,433	+				-0.6
5,047,434	-				+0.1
5,047,434	-				+1.8
5,047,434	-				+0.7
5,047,434	-				+0.3
5,047,434	-				-1.4
5,047,434	-				+0.2
5,047,510	+		PP_5684	0.20	-0.0
5,047,510	+		PP_5684	0.20	+0.1
5,047,511	-		PP_5684	0.21	-0.0
5,047,511	-		PP_5684	0.21	+0.1
5,047,518	+		PP_5684	0.24	-0.7
5,047,518	+		PP_5684	0.24	+0.2
5,047,519	-		PP_5684	0.24	-2.9
5,047,630	+				-1.5
5,047,630	+		PP_5684	0.77	-0.3
5,047,630	+		PP_5684	0.77	+4.3
5,047,630	+		PP_5684	0.77	+0.6
5,047,631	-		PP_5684	0.77	+0.6
5,047,631	-		PP_5684	0.77	-0.8
5,047,631	-		PP_5684	0.77	+1.8
5,047,631	-				+0.8
5,047,631	-		PP_5684	0.77	-0.9