Strain Fitness in Pseudomonas putida KT2440 around PP_4154

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
4,691,152	-		PP_4151	0.60	-2.5
4,691,362	+				+0.7
4,691,362	+				-1.0
4,691,363	-				+1.7
4,691,364	+				+2.3
4,691,364	+				+0.7
4,691,365	-				+0.5
4,691,365	-				-0.2
4,691,377	+				-2.0
4,691,377	+				+1.4
4,691,378	-				-0.5
4,691,382	+				-1.1
4,691,383	-				+0.1
4,691,416	+		PP_4152	0.14	+0.7
4,691,417	-		PP_4152	0.14	-0.2
4,691,433	+		PP_4152	0.17	+1.0
4,691,433	+		PP_4152	0.17	-1.2
4,691,434	-		PP_4152	0.17	+0.8
4,691,434	-		PP_4152	0.17	-1.5
4,691,434	-		PP_4152	0.17	-1.5
4,691,609	+		PP_4152	0.47	-0.9
4,691,610	-		PP_4152	0.47	+0.1
4,691,803	+		PP_4152	0.81	-0.6
4,691,803	+		PP_4152	0.81	+0.7
4,691,830	+		PP_4152	0.86	+0.3
4,691,830	+		PP_4152	0.86	-0.3
4,691,830	+		PP_4152	0.86	-0.6
4,691,830	+		PP_4152	0.86	-2.0
4,691,831	-		PP_4152	0.86	+0.6
4,691,831	-		PP_4152	0.86	+1.4
4,691,838	+		PP_4152	0.87	-1.6
4,691,839	-		PP_4152	0.87	-0.3
4,691,839	-		PP_4152	0.87	+0.5
4,691,839	-		PP_4152	0.87	+2.1
4,691,915	-				+3.0
4,691,987	+				-0.3
4,691,988	-				-0.8
4,692,052	+				-1.8
4,692,084	+				-1.9
4,692,085	-				+0.7
4,692,243	+				+0.1
4,692,243	+				-1.5
4,692,321	+				+0.1
4,692,348	+				-0.9
4,692,349	-				-1.9
4,692,501	+		PP_4154	0.13	+2.5
4,692,501	+		PP_4154	0.13	+0.4
4,692,502	-		PP_4154	0.13	+1.6
4,692,626	+		PP_4154	0.17	+2.7
4,692,627	-		PP_4154	0.17	-1.1
4,692,887	+				+0.7
4,692,973	-		PP_4154	0.29	-0.8
4,693,073	-		PP_4154	0.32	-0.6
4,693,096	-		PP_4154	0.33	-1.7
4,693,283	-		PP_4154	0.39	-0.9
4,693,283	-		PP_4154	0.39	+0.5
4,693,475	-		PP_4154	0.46	+0.4
4,693,645	+		PP_4154	0.52	+0.9
4,693,645	+		PP_4154	0.52	-3.5
4,693,645	+		PP_4154	0.52	-2.0
4,693,646	-		PP_4154	0.52	+0.4
4,693,646	-		PP_4154	0.52	-1.7
4,693,827	+		PP_4154	0.58	+1.1
4,693,827	+		PP_4154	0.58	+1.7
4,693,828	-		PP_4154	0.58	-0.4
4,693,828	-		PP_4154	0.58	-2.7
4,693,828	-		PP_4154	0.58	-0.4
4,693,830	+		PP_4154	0.58	-0.8
4,693,830	+		PP_4154	0.58	+0.9
4,693,830	+		PP_4154	0.58	-3.3
4,693,830	+		PP_4154	0.58	+1.6
4,693,830	+		PP_4154	0.58	-0.7
4,693,831	-		PP_4154	0.58	-0.8
4,693,869	+		PP_4154	0.59	-2.3
4,693,869	+		PP_4154	0.59	+0.9
4,693,870	-		PP_4154	0.60	-0.9
4,693,881	-		PP_4154	0.60	+1.7
4,693,897	-		PP_4154	0.60	-2.0
4,694,128	-		PP_4154	0.68	-0.4
4,694,398	-		PP_4154	0.78	+0.7
4,694,448	+		PP_4154	0.79	-0.2
4,694,448	+		PP_4154	0.79	-1.4
4,694,448	+		PP_4154	0.79	+3.0
4,694,500	+		PP_4154	0.81	-1.6
4,694,501	-		PP_4154	0.81	-1.1
4,694,501	-		PP_4154	0.81	+0.3
4,694,501	-		PP_4154	0.81	+1.7
4,694,505	+		PP_4154	0.81	-3.2
4,694,523	+		PP_4154	0.82	-1.8
4,694,567	+		PP_4154	0.83	-2.4
4,694,567	+		PP_4154	0.83	-3.2
4,694,567	+		PP_4154	0.83	-1.3
4,694,567	+		PP_4154	0.83	-1.1
4,694,567	+		PP_4154	0.83	-1.7
4,694,568	-		PP_4154	0.83	+3.5
4,694,568	-				-3.4
4,694,655	+		PP_4154	0.86	+0.7
4,694,767	-				-0.9
4,694,839	-				-0.7
4,695,012	+				-1.1
4,695,012	+				+0.9
4,695,012	+				+4.4
4,695,013	-				+0.2
4,695,013	-				-0.9
4,695,013	-				+1.5
4,695,055	-				+0.0
4,695,055	-				-1.2
4,695,247	+		PP_4155	0.15	+1.7
4,695,255	+		PP_4155	0.16	-0.3
4,695,255	+		PP_4155	0.16	+0.5
4,695,255	+		PP_4155	0.16	+0.6
4,695,256	-		PP_4155	0.16	+0.3
4,695,259	+		PP_4155	0.16	+0.2
4,695,260	-		PP_4155	0.16	-2.7
4,695,260	-		PP_4155	0.16	-0.1
4,695,354	+		PP_4155	0.24	-2.1
4,695,354	+		PP_4155	0.24	+1.7
4,695,355	-		PP_4155	0.24	-0.3
4,695,364	-		PP_4155	0.25	-0.1
4,695,375	-		PP_4155	0.26	+2.7
4,695,375	-		PP_4155	0.26	-2.2
4,695,535	+		PP_4155	0.39	+0.7
4,695,551	+		PP_4155	0.40	-1.6
4,695,551	+		PP_4155	0.40	-1.2
4,695,551	+		PP_4155	0.40	+0.1
4,695,552	-		PP_4155	0.40	+1.0
4,695,627	+		PP_4155	0.46	+0.0
4,695,628	-		PP_4155	0.46	-0.5
4,695,628	-		PP_4155	0.46	+0.1
4,695,691	+		PP_4155	0.52	+4.8
4,695,692	-		PP_4155	0.52	+0.7