Strain Fitness in Pseudomonas putida KT2440 around PP_4080

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
4,607,185	+		PP_4078	0.86	-1.8
4,607,185	+		PP_4078	0.86	+1.8
4,607,185	+		PP_4078	0.86	-3.2
4,607,186	-		PP_4078	0.86	+0.0
4,607,186	-		PP_4078	0.86	-2.0
4,607,186	-		PP_4078	0.86	-1.0
4,607,254	+				-0.8
4,607,435	-		PP_4079	0.13	+0.0
4,607,733	+		PP_4079	0.51	-1.7
4,607,733	+		PP_4079	0.51	+1.0
4,607,733	+		PP_4079	0.51	-1.6
4,607,734	-		PP_4079	0.51	+2.0
4,607,734	-		PP_4079	0.51	+2.8
4,607,734	-		PP_4079	0.51	+0.7
4,607,734	-		PP_4079	0.51	+2.0
4,607,734	-		PP_4079	0.51	+0.0
4,607,734	-		PP_4079	0.51	-0.2
4,607,734	-		PP_4079	0.51	+1.8
4,607,859	+		PP_4079	0.67	-2.1
4,607,900	+		PP_4079	0.72	+3.5
4,607,901	-		PP_4079	0.72	+0.1
4,607,905	-		PP_4079	0.72	-1.7
4,607,905	-		PP_4079	0.72	-0.5
4,607,905	-		PP_4079	0.72	+3.0
4,607,923	-		PP_4079	0.75	+1.1
4,607,954	-		PP_4079	0.78	+0.8
4,608,006	+		PP_4079	0.85	-0.8
4,608,186	+				-0.8
4,608,187	-				+1.8
4,608,187	-				-0.4
4,608,302	-				+0.2
4,608,302	-				+4.1
4,608,323	+		PP_4080	0.11	+2.1
4,608,323	+		PP_4080	0.11	+1.0
4,608,323	+		PP_4080	0.11	+1.8
4,608,324	-		PP_4080	0.11	-0.3
4,608,470	+		PP_4080	0.22	-1.5
4,608,470	+		PP_4080	0.22	+1.3
4,608,471	-		PP_4080	0.22	+0.2
4,608,471	-		PP_4080	0.22	+0.8
4,608,661	+		PP_4080	0.36	+0.8
4,608,661	+		PP_4080	0.36	+0.8
4,608,662	-		PP_4080	0.36	+0.6
4,608,662	-		PP_4080	0.36	+0.5
4,608,662	-		PP_4080	0.36	+0.1
4,608,662	-		PP_4080	0.36	-0.6
4,608,662	-		PP_4080	0.36	+0.8
4,608,662	-		PP_4080	0.36	+0.5
4,608,685	-		PP_4080	0.38	-1.2
4,608,685	-		PP_4080	0.38	+0.4
4,608,709	-		PP_4080	0.40	-0.3
4,608,733	+		PP_4080	0.42	-0.6
4,608,962	-		PP_4080	0.59	-0.3
4,608,962	-		PP_4080	0.59	+0.8
4,608,962	-		PP_4080	0.59	-0.2
4,609,059	+		PP_4080	0.66	-1.3
4,609,059	+		PP_4080	0.66	+0.9
4,609,059	+		PP_4080	0.66	+2.3
4,609,060	-		PP_4080	0.66	+3.9
4,609,083	+		PP_4080	0.68	-0.9
4,609,083	+		PP_4080	0.68	-0.1
4,609,084	-		PP_4080	0.68	+0.7
4,609,388	-				-1.1
4,609,388	-				-2.0
4,609,525	+				+0.8
4,609,525	+				-0.7
4,609,531	+				-2.6
4,609,668	-		PP_4081	0.18	+2.3
4,609,759	-		PP_4081	0.28	-0.6
4,609,759	-		PP_4081	0.28	-1.4
4,609,820	-		PP_4081	0.35	-0.2
4,609,848	+		PP_4081	0.38	-0.4
4,609,849	-		PP_4081	0.38	-0.1
4,609,863	-		PP_4081	0.40	-0.2
4,609,887	-		PP_4081	0.43	+1.3
4,609,892	+		PP_4081	0.43	+1.2
4,609,892	+		PP_4081	0.43	+0.8
4,609,893	-		PP_4081	0.43	-0.9
4,609,908	-		PP_4081	0.45	+0.9
4,610,064	+				+0.8
4,610,322	-				-0.5
4,610,322	-				-0.0
4,610,322	-				+3.0
4,610,322	-				-0.6
4,610,328	-				-1.0
4,610,328	-				+0.5