Strain Fitness in Pseudomonas putida KT2440 around PP_4042

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
4,554,015	+		PP_4041	0.49	-0.3
4,554,015	+		PP_4041	0.49	-1.8
4,554,015	+		PP_4041	0.49	+1.9
4,554,015	+		PP_4041	0.49	+0.8
4,554,016	-		PP_4041	0.49	+0.9
4,554,016	-		PP_4041	0.49	-1.2
4,554,016	-		PP_4041	0.49	-1.1
4,554,040	+		PP_4041	0.51	+0.6
4,554,093	+		PP_4041	0.54	+2.9
4,554,094	-				-0.2
4,554,153	+		PP_4041	0.57	+0.4
4,554,153	+		PP_4041	0.57	-0.1
4,554,154	-		PP_4041	0.57	+0.3
4,554,215	-		PP_4041	0.60	-1.3
4,554,231	+		PP_4041	0.61	-1.3
4,554,231	+		PP_4041	0.61	+0.3
4,554,231	+		PP_4041	0.61	-1.8
4,554,231	+		PP_4041	0.61	+1.0
4,554,232	-		PP_4041	0.61	-0.9
4,554,232	-		PP_4041	0.61	+2.8
4,554,277	+		PP_4041	0.64	+0.1
4,554,278	-		PP_4041	0.64	+0.4
4,554,279	+		PP_4041	0.64	-0.5
4,554,279	+		PP_4041	0.64	+1.1
4,554,279	+		PP_4041	0.64	+0.2
4,554,280	-		PP_4041	0.64	-0.5
4,554,280	-		PP_4041	0.64	+0.6
4,554,280	-		PP_4041	0.64	+0.2
4,554,280	-		PP_4041	0.64	-1.8
4,554,280	-		PP_4041	0.64	-1.8
4,554,280	-		PP_4041	0.64	+0.6
4,554,288	-		PP_4041	0.64	+2.0
4,554,445	+		PP_4041	0.73	-0.2
4,554,726	+		PP_4041	0.89	+0.2
4,554,727	-				+0.8
4,554,903	+				+1.8
4,554,903	+				+0.3
4,555,070	+				-1.2
4,555,071	-				+0.8
4,555,187	+		PP_4042	0.13	-1.8
4,555,187	+		PP_4042	0.13	-0.8
4,555,187	+		PP_4042	0.13	+1.3
4,555,188	-		PP_4042	0.13	+0.5
4,555,188	-		PP_4042	0.13	-1.2
4,555,188	-		PP_4042	0.13	+0.0
4,555,238	+		PP_4042	0.16	+1.2
4,555,239	-		PP_4042	0.16	+0.3
4,555,344	-		PP_4042	0.23	+0.8
4,555,388	+		PP_4042	0.26	-1.4
4,555,457	+		PP_4042	0.31	-2.7
4,555,457	+		PP_4042	0.31	+0.1
4,555,458	-		PP_4042	0.31	-1.5
4,555,511	+		PP_4042	0.35	-0.7
4,555,512	-		PP_4042	0.35	-3.1
4,555,512	-		PP_4042	0.35	+3.8
4,555,512	-		PP_4042	0.35	+4.8
4,555,512	-		PP_4042	0.35	-0.5
4,555,512	-		PP_4042	0.35	+0.8
4,555,512	-		PP_4042	0.35	-3.0
4,555,595	+		PP_4042	0.40	+1.5
4,555,606	+		PP_4042	0.41	-1.0
4,555,781	+		PP_4042	0.52	-0.6
4,555,781	+		PP_4042	0.52	-1.8
4,555,781	+		PP_4042	0.52	-1.6
4,555,781	+		PP_4042	0.52	-2.0
4,555,782	-		PP_4042	0.53	-1.0
4,555,782	-		PP_4042	0.53	+1.4
4,555,844	+		PP_4042	0.57	-3.2
4,555,844	+		PP_4042	0.57	-1.2
4,555,844	+		PP_4042	0.57	+4.8
4,555,844	+		PP_4042	0.57	-1.9
4,555,844	+		PP_4042	0.57	-3.3
4,555,844	+		PP_4042	0.57	+0.4
4,555,844	+		PP_4042	0.57	+3.7
4,555,845	-		PP_4042	0.57	-0.2
4,555,899	+		PP_4042	0.60	-1.1
4,555,899	+		PP_4042	0.60	-0.2
4,555,900	-		PP_4042	0.60	+0.1
4,555,900	-		PP_4042	0.60	-2.1
4,555,900	-		PP_4042	0.60	+3.6
4,555,926	-		PP_4042	0.62	-0.8
4,555,926	-		PP_4042	0.62	-1.6
4,555,940	+		PP_4042	0.63	-0.1
4,556,177	+		PP_4042	0.79	-2.6
4,556,177	+		PP_4042	0.79	-1.0
4,556,211	-				+0.8
4,556,239	+		PP_4042	0.83	-0.2
4,556,239	+		PP_4042	0.83	-1.8
4,556,239	+		PP_4042	0.83	+0.7
4,556,240	-		PP_4042	0.83	-0.9
4,556,240	-		PP_4042	0.83	+1.4
4,556,240	-		PP_4042	0.83	+0.8
4,556,340	+		PP_4042	0.90	-1.8
4,556,340	+		PP_4042	0.90	+1.5
4,556,400	-				+1.7
4,556,400	-				-0.8
4,556,400	-				+0.1
4,556,461	-				-2.2
4,556,560	+				+3.1
4,556,560	+				+1.5
4,556,560	+				-1.7
4,556,560	+				+0.5
4,556,561	-				-0.2
4,556,561	-				-0.6
4,556,561	-				+0.6
4,556,733	-		PP_4043	0.24	+0.1
4,556,870	-		PP_4043	0.38	+0.2
4,556,870	-		PP_4043	0.38	+1.5
4,556,917	+		PP_4043	0.43	-3.2
4,556,918	-		PP_4043	0.43	-0.8
4,556,950	+		PP_4043	0.46	+0.6
4,556,950	+		PP_4043	0.46	-3.4
4,556,950	+				+1.8
4,556,951	-		PP_4043	0.47	-1.9
4,556,951	-		PP_4043	0.47	-3.5
4,557,133	+		PP_4043	0.65	+0.4
4,557,133	+		PP_4043	0.65	+1.3
4,557,134	-		PP_4043	0.65	+0.1
4,557,184	+		PP_4043	0.70	+2.0
4,557,184	+		PP_4043	0.70	-0.3
4,557,184	+		PP_4043	0.70	-0.6
4,557,185	-		PP_4043	0.70	-1.2
4,557,316	-		PP_4043	0.84	-0.6
4,557,447	-				-0.1