Strain Fitness in Pseudomonas putida KT2440 around PP_3974

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
4,481,041	+		PP_3972	0.69	+1.3
4,481,041	+		PP_3972	0.69	-3.3
4,481,041	+		PP_3972	0.69	-0.6
4,481,042	-		PP_3972	0.69	+1.3
4,481,042	-		PP_3972	0.69	+1.1
4,481,042	-		PP_3972	0.69	-0.7
4,481,042	-		PP_3972	0.69	-3.6
4,481,086	+		PP_3972	0.72	+4.9
4,481,086	+		PP_3972	0.72	-1.4
4,481,087	-		PP_3972	0.72	-1.1
4,481,087	-		PP_3972	0.72	-0.9
4,481,087	-		PP_3972	0.72	-1.1
4,481,087	-		PP_3972	0.72	-1.1
4,481,087	-		PP_3972	0.72	-0.6
4,481,122	+		PP_3972	0.75	-2.1
4,481,122	+		PP_3972	0.75	+0.8
4,481,123	-		PP_3972	0.75	+0.3
4,481,123	-		PP_3972	0.75	+0.1
4,481,123	-		PP_3972	0.75	+0.1
4,481,123	-		PP_3972	0.75	-0.1
4,481,123	-		PP_3972	0.75	-0.5
4,481,123	-		PP_3972	0.75	+0.0
4,481,123	-		PP_3972	0.75	-0.2
4,481,153	+		PP_3972	0.77	-0.3
4,481,153	+		PP_3972	0.77	-2.8
4,481,153	+		PP_3972	0.77	-0.1
4,481,154	-		PP_3972	0.77	+0.7
4,481,154	-		PP_3972	0.77	+0.6
4,481,224	+		PP_3972	0.82	-0.6
4,481,224	+		PP_3972	0.82	+3.2
4,481,224	+		PP_3972	0.82	+1.6
4,481,224	+		PP_3972	0.82	-2.3
4,481,224	+		PP_3972	0.82	-0.7
4,481,225	-		PP_3972	0.82	-0.6
4,481,225	-		PP_3972	0.82	-1.4
4,481,225	-		PP_3972	0.82	+1.7
4,481,225	-		PP_3972	0.82	-1.1
4,481,225	-		PP_3972	0.82	+1.9
4,481,228	+		PP_3972	0.83	-0.3
4,481,228	+		PP_3972	0.83	-1.1
4,481,228	+		PP_3972	0.83	-0.0
4,481,228	+		PP_3972	0.83	-1.0
4,481,228	+		PP_3972	0.83	-0.7
4,481,229	-		PP_3972	0.83	+0.2
4,481,229	-		PP_3972	0.83	+2.1
4,481,229	-		PP_3972	0.83	+0.0
4,481,232	-		PP_3972	0.83	-0.8
4,481,232	-		PP_3972	0.83	-1.1
4,481,232	-		PP_3972	0.83	+0.9
4,481,240	+		PP_3972	0.84	+1.0
4,481,241	-		PP_3972	0.84	-0.3
4,481,241	-		PP_3972	0.84	-0.7
4,481,241	-		PP_3972	0.84	-0.8
4,481,241	-		PP_3972	0.84	-0.6
4,481,276	+		PP_3972	0.86	-0.2
4,481,277	-		PP_3972	0.86	-0.1
4,481,367	+				+0.4
4,481,367	+				-0.3
4,481,367	+				+0.6
4,481,387	+				-0.6
4,481,387	+				-0.9
4,481,388	-				-0.1
4,481,388	-				-0.5
4,481,388	-				-3.2
4,481,388	-				+2.3
4,481,390	+				-1.0
4,481,455	+				-0.9
4,481,456	-				-1.4
4,481,470	+				-0.8
4,481,470	+				+1.9
4,481,470	+				-1.6
4,481,470	+				-2.3
4,481,471	-				-2.2
4,481,502	+				-0.4
4,481,502	+				-1.5
4,481,503	-				+0.6
4,481,503	-				-0.2
4,481,503	-				-0.7
4,481,503	-				+0.4
4,481,514	+				+1.6
4,481,515	-				+0.7
4,481,515	-				+0.3
4,481,518	-				-0.4
4,481,549	+				-1.0
4,481,550	-				-0.1
4,481,587	-				-0.7
4,481,587	-				-0.1
4,481,587	-				+4.5
4,481,971	+				+2.1
4,481,972	-				+0.2
4,481,972	-				-2.2
4,481,972	-				-0.6
4,481,972	-				+3.7
4,481,974	+				-0.9
4,481,975	-				-0.4
4,482,089	+				+4.0
4,482,147	+		PP_3974	0.15	+0.4
4,482,183	-		PP_3974	0.19	+3.4
4,482,183	-		PP_3974	0.19	+0.4
4,482,251	-		PP_3974	0.26	+1.8
4,482,251	-		PP_3974	0.26	-0.7
4,482,397	+		PP_3974	0.41	+1.2
4,482,397	+		PP_3974	0.41	-1.2
4,482,398	-		PP_3974	0.41	+2.4
4,482,398	-		PP_3974	0.41	+0.3
4,482,447	+		PP_3974	0.46	+0.3
4,482,504	+		PP_3974	0.52	+0.5
4,482,581	-		PP_3974	0.59	-1.5
4,482,643	+		PP_3974	0.66	-0.7
4,482,680	-		PP_3974	0.69	+0.0
4,482,708	+		PP_3974	0.72	+1.7
4,482,708	+		PP_3974	0.72	-0.3
4,482,750	+		PP_3974	0.76	+1.6
4,482,750	+		PP_3974	0.76	-0.4
4,482,751	-		PP_3974	0.77	+1.3
4,482,896	+				-0.0
4,482,897	-				-1.5
4,482,979	+				+0.8
4,483,075	+		PP_3975	0.16	+0.0
4,483,085	-		PP_3975	0.18	-0.4
4,483,085	-		PP_3975	0.18	-0.2
4,483,085	-		PP_3975	0.18	+0.0
4,483,085	-		PP_3975	0.18	+0.5
4,483,087	+		PP_3975	0.19	+2.4
4,483,087	+		PP_3975	0.19	-1.2
4,483,088	-		PP_3975	0.19	+0.7
4,483,088	-		PP_3975	0.19	-0.8
4,483,116	+		PP_3975	0.25	-1.2
4,483,117	-		PP_3975	0.25	-0.7
4,483,135	+		PP_3975	0.29	+0.3
4,483,173	+		PP_3975	0.37	+1.1
4,483,173	+		PP_3975	0.37	+2.6
4,483,173	+		PP_3975	0.37	-0.2
4,483,174	-		PP_3975	0.37	+1.2
4,483,174	-		PP_3975	0.37	+0.6
4,483,174	-		PP_3975	0.37	+2.7
4,483,174	-		PP_3975	0.37	-0.7
4,483,174	-		PP_3975	0.37	+0.4
4,483,212	+		PP_3975	0.46	+0.7
4,483,212	+		PP_3975	0.46	+0.4
4,483,212	+		PP_3975	0.46	+0.4
4,483,213	-		PP_3975	0.46	-0.3
4,483,213	-		PP_3975	0.46	+0.8
4,483,213	-		PP_3975	0.46	-0.2
4,483,213	-		PP_3975	0.46	-0.5
4,483,213	-		PP_3975	0.46	-0.1
4,483,213	-		PP_3975	0.46	-1.6
4,483,213	-		PP_3975	0.46	+2.4
4,483,243	-		PP_3975	0.52	-1.7
4,483,425	+				+0.8
4,483,426	-				+0.7
4,483,515	+				-0.2
4,483,515	+				-1.0
4,483,516	-				-1.2
4,483,516	-				+0.4
4,483,516	-				+1.8
4,483,600	+				-2.5
4,483,600	+				-1.5
4,483,601	-				-0.2
4,483,795	-		PP_3976	0.18	-2.0
4,483,873	+		PP_3976	0.30	+0.3
4,483,873	+		PP_3976	0.30	-2.6
4,483,873	+		PP_3976	0.30	-2.4
4,483,874	-		PP_3976	0.30	-1.1
4,483,874	-		PP_3976	0.30	-0.5
4,483,874	-		PP_3976	0.30	+2.4
4,483,878	-		PP_3976	0.30	-0.5