Strain Fitness in Pseudomonas putida KT2440 around PP_3922

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
4,426,760	+		PP_3920	0.37	+1.0
4,426,783	-		PP_3920	0.40	+1.9
4,426,783	-		PP_3920	0.40	+2.2
4,426,783	-		PP_3920	0.40	+0.3
4,426,783	-		PP_3920	0.40	+0.4
4,426,810	+		PP_3920	0.42	-0.5
4,426,810	+		PP_3920	0.42	+1.6
4,426,811	-		PP_3920	0.42	+2.6
4,426,901	+		PP_3920	0.51	+1.9
4,426,902	-		PP_3920	0.51	-0.4
4,426,902	-		PP_3920	0.51	-0.3
4,426,946	+		PP_3920	0.55	+0.5
4,426,946	+		PP_3920	0.55	+0.2
4,426,946	+		PP_3920	0.55	-0.1
4,426,975	-		PP_3920	0.58	+0.9
4,426,975	-		PP_3920	0.58	+2.2
4,426,975	-		PP_3920	0.58	+1.0
4,427,009	+		PP_3920	0.61	+1.1
4,427,010	-		PP_3920	0.61	+2.5
4,427,058	+		PP_3920	0.66	+0.9
4,427,059	-		PP_3920	0.66	+0.9
4,427,073	+		PP_3920	0.67	+0.0
4,427,073	+		PP_3920	0.67	-0.3
4,427,130	+		PP_3920	0.73	+2.3
4,427,131	-		PP_3920	0.73	+0.3
4,427,131	-		PP_3920	0.73	-1.1
4,427,441	+				-2.4
4,427,625	-				+0.9
4,427,800	-				-0.8
4,427,820	+				+0.9
4,427,820	+				-1.6
4,427,821	-				-0.6
4,427,849	+		PP_3922	0.10	+0.9
4,427,849	+		PP_3922	0.10	+0.9
4,427,894	+		PP_3922	0.15	+2.5
4,427,895	-		PP_3922	0.15	-2.3
4,428,053	+		PP_3922	0.30	-1.1
4,428,053	+		PP_3922	0.30	-2.1
4,428,054	-		PP_3922	0.30	-1.2
4,428,107	+		PP_3922	0.35	+0.9
4,428,192	+		PP_3922	0.44	+2.3
4,428,192	+		PP_3922	0.44	+0.7
4,428,192	+		PP_3922	0.44	+0.9
4,428,192	+		PP_3922	0.44	+1.3
4,428,192	+		PP_3922	0.44	+0.1
4,428,192	+		PP_3922	0.44	+1.1
4,428,192	+		PP_3922	0.44	-0.4
4,428,193	-		PP_3922	0.44	-0.7
4,428,193	-		PP_3922	0.44	+1.3
4,428,193	-		PP_3922	0.44	+0.6
4,428,193	-		PP_3922	0.44	+0.3
4,428,251	+		PP_3922	0.50	-2.5
4,428,251	+		PP_3922	0.50	-1.0
4,428,252	-		PP_3922	0.50	+0.9
4,428,341	+		PP_3922	0.58	+2.4
4,428,341	+		PP_3922	0.58	+0.9
4,428,478	+		PP_3922	0.72	+1.6
4,428,637	+		PP_3922	0.87	-0.3
4,428,638	-		PP_3922	0.87	-1.3
4,428,638	-		PP_3922	0.87	+1.3
4,428,638	-		PP_3922	0.87	+0.9
4,428,746	+				-2.1
4,428,776	+				+0.2
4,428,777	-				-0.7
4,428,816	+				+2.5
4,428,817	-				-1.9
4,428,818	-				+0.2
4,428,975	+				+0.5
4,429,017	+				-3.1
4,429,018	-				+2.1
4,429,024	+				-1.0
4,429,024	+				-0.7
4,429,025	-				-2.1
4,429,411	+		PP_3923	0.63	+0.5
4,429,411	+		PP_3923	0.63	-0.1
4,429,412	-		PP_3923	0.63	+2.7
4,429,466	+		PP_3923	0.71	+2.8
4,429,466	+		PP_3923	0.71	-0.8
4,429,467	-		PP_3923	0.71	+2.3
4,429,467	-		PP_3923	0.71	+1.0
4,429,467	-		PP_3923	0.71	+3.7
4,429,467	-		PP_3923	0.71	-0.7
4,429,467	-		PP_3923	0.71	-0.4
4,429,467	-		PP_3923	0.71	+2.6
4,429,517	+		PP_3923	0.78	+0.9
4,429,518	-		PP_3923	0.78	-1.2
4,429,518	-		PP_3923	0.78	-2.1
4,429,521	-		PP_3923	0.78	+2.9
4,429,665	+				-0.4
4,429,705	+				+0.1
4,429,706	-				-0.7
4,429,715	+				-2.3
4,429,715	+				+1.0
4,429,715	+				-0.6
4,429,716	-				+0.9
4,429,716	-				-1.9
4,429,716	-				-2.3