Experiment: pH 8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3805 and PP_3806 are separated by 26 nucleotides PP_3806 and PP_3807 are separated by 56 nucleotides PP_3807 and PP_3808 overlap by 4 nucleotides PP_3808 and PP_3810 are separated by 133 nucleotides PP_3810 and PP_3811 are separated by 26 nucleotides
PP_3805: PP_3805 - lipoprotein required for swarming, at 4,333,144 to 4,334,196
_3805
PP_3806: PP_3806 - Hydrolase, isochorismatase family, at 4,334,223 to 4,334,774
_3806
PP_3807: PP_3807 - Thioesterase, at 4,334,831 to 4,335,550
_3807
PP_3808: PP_3808 - Antibiotic synthesis protein MbtH, at 4,335,547 to 4,335,768
_3808
PP_3810: PP_3810 - conserved protein of unknown function, at 4,335,902 to 4,336,303
_3810
PP_3811: PP_3811 - Transcriptional regulator, LysR family, at 4,336,330 to 4,337,214
_3811
Position (kb) 4334
4335
4336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4333.838 kb on + strand, within PP_3805 at 4333.838 kb on + strand, within PP_3805 at 4333.896 kb on + strand, within PP_3805 at 4333.896 kb on + strand, within PP_3805 at 4333.897 kb on - strand, within PP_3805 at 4333.897 kb on - strand, within PP_3805 at 4334.102 kb on - strand at 4334.245 kb on + strand at 4334.322 kb on + strand, within PP_3806 at 4334.322 kb on + strand, within PP_3806 at 4334.322 kb on + strand, within PP_3806 at 4334.575 kb on - strand, within PP_3806 at 4334.801 kb on + strand at 4335.051 kb on + strand, within PP_3807 at 4335.051 kb on + strand, within PP_3807 at 4335.051 kb on + strand, within PP_3807 at 4335.052 kb on - strand, within PP_3807 at 4335.052 kb on - strand, within PP_3807 at 4335.207 kb on + strand, within PP_3807 at 4335.207 kb on + strand, within PP_3807 at 4335.208 kb on - strand, within PP_3807 at 4335.208 kb on - strand, within PP_3807 at 4335.223 kb on + strand, within PP_3807 at 4335.339 kb on + strand, within PP_3807 at 4335.339 kb on + strand, within PP_3807 at 4335.339 kb on + strand, within PP_3807 at 4335.339 kb on + strand, within PP_3807 at 4335.339 kb on + strand, within PP_3807 at 4335.340 kb on - strand, within PP_3807 at 4335.447 kb on - strand, within PP_3807 at 4335.455 kb on + strand, within PP_3807 at 4335.456 kb on - strand, within PP_3807 at 4335.496 kb on - strand at 4335.520 kb on - strand at 4335.620 kb on + strand, within PP_3808 at 4335.704 kb on + strand, within PP_3808 at 4335.832 kb on + strand at 4335.832 kb on + strand at 4335.893 kb on + strand at 4335.894 kb on - strand at 4335.894 kb on - strand at 4335.896 kb on + strand at 4335.896 kb on + strand at 4335.897 kb on - strand at 4335.992 kb on - strand, within PP_3810 at 4336.062 kb on - strand at 4336.111 kb on - strand, within PP_3810 at 4336.297 kb on + strand at 4336.297 kb on + strand at 4336.298 kb on - strand at 4336.298 kb on - strand at 4336.314 kb on + strand at 4336.315 kb on - strand at 4336.315 kb on - strand at 4336.322 kb on - strand at 4336.492 kb on - strand, within PP_3811 at 4336.492 kb on - strand, within PP_3811 at 4336.505 kb on + strand, within PP_3811 at 4336.505 kb on + strand, within PP_3811 at 4336.505 kb on + strand, within PP_3811 at 4336.505 kb on + strand, within PP_3811 at 4336.506 kb on - strand, within PP_3811 at 4336.506 kb on - strand, within PP_3811 at 4336.506 kb on - strand, within PP_3811 at 4336.506 kb on - strand, within PP_3811
Per-strain Table
Position Strand Gene LocusTag Fraction pH 8 remove 4,333,838 + PP_3805 0.66 -0.9 4,333,838 + PP_3805 0.66 -0.2 4,333,896 + PP_3805 0.71 -0.3 4,333,896 + PP_3805 0.71 +0.3 4,333,897 - PP_3805 0.72 +1.4 4,333,897 - PP_3805 0.72 +1.2 4,334,102 - -0.5 4,334,245 + +1.0 4,334,322 + PP_3806 0.18 -0.1 4,334,322 + PP_3806 0.18 +4.2 4,334,322 + PP_3806 0.18 +0.6 4,334,575 - PP_3806 0.64 -1.0 4,334,801 + +1.7 4,335,051 + PP_3807 0.31 +0.1 4,335,051 + PP_3807 0.31 -0.6 4,335,051 + PP_3807 0.31 -2.1 4,335,052 - PP_3807 0.31 -0.1 4,335,052 - PP_3807 0.31 -3.1 4,335,207 + PP_3807 0.52 -2.3 4,335,207 + PP_3807 0.52 +4.3 4,335,208 - PP_3807 0.52 +1.6 4,335,208 - PP_3807 0.52 +0.6 4,335,223 + PP_3807 0.54 +0.4 4,335,339 + PP_3807 0.71 +0.3 4,335,339 + PP_3807 0.71 -2.8 4,335,339 + PP_3807 0.71 -0.6 4,335,339 + PP_3807 0.71 +0.9 4,335,339 + PP_3807 0.71 -0.5 4,335,340 - PP_3807 0.71 +0.9 4,335,447 - PP_3807 0.86 -1.1 4,335,455 + PP_3807 0.87 -1.0 4,335,456 - PP_3807 0.87 +2.9 4,335,496 - -0.0 4,335,520 - +2.9 4,335,620 + PP_3808 0.33 -0.1 4,335,704 + PP_3808 0.71 -0.5 4,335,832 + +0.9 4,335,832 + +0.9 4,335,893 + +0.4 4,335,894 - +0.4 4,335,894 - +1.3 4,335,896 + +0.9 4,335,896 + +0.9 4,335,897 - -2.1 4,335,992 - PP_3810 0.22 -2.6 4,336,062 - -0.7 4,336,111 - PP_3810 0.52 -0.5 4,336,297 + -1.0 4,336,297 + -1.9 4,336,298 - -1.4 4,336,298 - +0.8 4,336,314 + -1.0 4,336,315 - +0.3 4,336,315 - -0.0 4,336,322 - -0.7 4,336,492 - PP_3811 0.18 +0.9 4,336,492 - PP_3811 0.18 +1.9 4,336,505 + PP_3811 0.20 -0.3 4,336,505 + PP_3811 0.20 -1.2 4,336,505 + PP_3811 0.20 +1.1 4,336,505 + PP_3811 0.20 -0.8 4,336,506 - PP_3811 0.20 +0.2 4,336,506 - PP_3811 0.20 -1.7 4,336,506 - PP_3811 0.20 +0.9 4,336,506 - PP_3811 0.20 -2.6
Or see this region's nucleotide sequence