Strain Fitness in Pseudomonas putida KT2440 around PP_3787

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
4,314,006	+		PP_3786	0.17	-0.9
4,314,006	+		PP_3786	0.17	+3.5
4,314,006	+		PP_3786	0.17	-2.6
4,314,006	+		PP_3786	0.17	-3.1
4,314,006	+		PP_3786	0.17	-3.0
4,314,006	+		PP_3786	0.17	+1.6
4,314,006	+		PP_3786	0.17	+0.9
4,314,007	-		PP_3786	0.17	+0.9
4,314,007	-		PP_3786	0.17	-2.7
4,314,007	-		PP_3786	0.17	-0.4
4,314,007	-		PP_3786	0.17	+0.4
4,314,012	+		PP_3786	0.18	+0.4
4,314,013	-		PP_3786	0.18	-0.7
4,314,013	-		PP_3786	0.18	-0.7
4,314,013	-		PP_3786	0.18	-1.3
4,314,013	-		PP_3786	0.18	-0.1
4,314,092	-		PP_3786	0.24	-2.2
4,314,127	+		PP_3786	0.27	-2.6
4,314,127	+		PP_3786	0.27	+2.9
4,314,127	+		PP_3786	0.27	-0.3
4,314,142	+		PP_3786	0.28	-0.0
4,314,142	+		PP_3786	0.28	-0.1
4,314,143	-		PP_3786	0.28	-2.1
4,314,143	-		PP_3786	0.28	-3.6
4,314,143	-		PP_3786	0.28	-0.8
4,314,143	-		PP_3786	0.28	-2.0
4,314,146	+		PP_3786	0.29	-0.8
4,314,146	+		PP_3786	0.29	-1.7
4,314,147	-		PP_3786	0.29	-1.9
4,314,147	-		PP_3786	0.29	-1.6
4,314,147	-		PP_3786	0.29	+0.3
4,314,147	-		PP_3786	0.29	+0.5
4,314,195	-		PP_3786	0.33	-2.6
4,314,195	-		PP_3786	0.33	-3.4
4,314,226	+		PP_3786	0.35	+0.1
4,314,226	+		PP_3786	0.35	+0.5
4,314,227	-		PP_3786	0.35	+2.5
4,314,227	-		PP_3786	0.35	-2.8
4,314,227	-		PP_3786	0.35	-2.7
4,314,227	-		PP_3786	0.35	-2.9
4,314,278	-		PP_3786	0.40	-2.4
4,314,321	+		PP_3786	0.43	+0.7
4,314,423	+		PP_3786	0.52	+0.5
4,314,469	-		PP_3786	0.55	-1.7
4,314,551	+		PP_3786	0.62	-2.3
4,314,552	-		PP_3786	0.62	-0.1
4,314,628	+		PP_3786	0.69	-2.5
4,314,691	+		PP_3786	0.74	+0.9
4,314,691	+		PP_3786	0.74	+0.9
4,314,691	+		PP_3786	0.74	-0.3
4,314,691	+		PP_3786	0.74	-2.3
4,314,691	+		PP_3786	0.74	-2.5
4,314,691	+		PP_3786	0.74	-0.1
4,314,692	-		PP_3786	0.74	-0.7
4,314,692	-		PP_3786	0.74	+0.6
4,314,710	-		PP_3786	0.75	-1.3
4,314,749	-		PP_3786	0.79	+0.9
4,314,775	-		PP_3786	0.81	-0.7
4,314,901	+				-0.1
4,314,902	-				-0.1
4,314,974	-				-2.4
4,314,974	-				-1.7
4,314,974	-				-2.3
4,314,974	-				-2.4
4,315,059	-				-3.7
4,315,097	+		PP_3787	0.10	+1.3
4,315,222	+		PP_3787	0.24	-0.7
4,315,222	+		PP_3787	0.24	-1.7
4,315,222	+		PP_3787	0.24	-0.8
4,315,222	+		PP_3787	0.24	-1.6
4,315,222	+		PP_3787	0.24	-0.1
4,315,222	+		PP_3787	0.24	-1.2
4,315,222	+		PP_3787	0.24	+2.8
4,315,223	-		PP_3787	0.24	-4.3
4,315,223	-		PP_3787	0.24	-2.3
4,315,223	-		PP_3787	0.24	-2.3
4,315,223	-		PP_3787	0.24	-1.9
4,315,223	-		PP_3787	0.24	-0.7
4,315,223	-		PP_3787	0.24	-3.0
4,315,223	-		PP_3787	0.24	-3.3
4,315,223	-		PP_3787	0.24	-3.0
4,315,223	-		PP_3787	0.24	-3.6
4,315,223	-		PP_3787	0.24	-0.7
4,315,303	+		PP_3787	0.33	+0.6
4,315,303	+		PP_3787	0.33	-0.4
4,315,303	+		PP_3787	0.33	+0.8
4,315,303	+		PP_3787	0.33	-3.9
4,315,303	+		PP_3787	0.33	-0.1
4,315,304	-		PP_3787	0.33	-2.1
4,315,304	-		PP_3787	0.33	-3.2
4,315,304	-		PP_3787	0.33	-1.7
4,315,304	-		PP_3787	0.33	+1.2
4,315,304	-		PP_3787	0.33	-3.1
4,315,395	+		PP_3787	0.43	+0.3
4,315,395	+		PP_3787	0.43	+0.1
4,315,396	-		PP_3787	0.43	-1.0
4,315,396	-		PP_3787	0.43	-1.3
4,315,794	-		PP_3787	0.86	-4.0
4,315,794	-		PP_3787	0.86	-4.4
4,315,794	-		PP_3787	0.86	-0.8
4,315,830	+				+0.9
4,315,831	-				-3.2
4,315,847	+				+0.2
4,315,847	+				+1.1
4,315,848	-				-3.3
4,315,893	+				+2.9
4,315,893	+				+2.1
4,315,931	+				+0.3
4,315,932	-				-3.1
4,315,984	+				-3.5
4,315,984	+				-2.7
4,315,985	-				+1.3
4,315,985	-				-3.2
4,315,995	+				+0.1
4,315,995	+				-2.7
4,315,995	+				-3.1
4,315,996	-				-3.8
4,316,053	+				-1.0
4,316,063	+				-3.1
4,316,063	+				-1.3
4,316,063	+				-0.4
4,316,063	+				-1.9
4,316,063	+				+0.9
4,316,064	-				+0.9
4,316,200	+		PP_3788	0.18	-1.9
4,316,201	-		PP_3788	0.18	-3.0
4,316,306	+		PP_3788	0.25	-2.9
4,316,307	-		PP_3788	0.25	-2.7
4,316,317	-		PP_3788	0.26	-3.2
4,316,449	-		PP_3788	0.34	-4.1
4,316,491	+		PP_3788	0.37	+0.9
4,316,491	+		PP_3788	0.37	+0.9
4,316,494	+		PP_3788	0.37	-1.0
4,316,494	+				-1.9
4,316,495	-		PP_3788	0.37	-0.1
4,316,495	-		PP_3788	0.37	-1.5
4,316,495	-		PP_3788	0.37	-3.5
4,316,632	+		PP_3788	0.46	-2.8
4,316,633	-				-1.4
4,316,745	+		PP_3788	0.53	+1.5
4,316,746	-		PP_3788	0.53	-1.1
4,316,746	-		PP_3788	0.53	-3.8
4,316,818	-		PP_3788	0.58	-2.2
4,316,818	-		PP_3788	0.58	-4.2
4,316,818	-		PP_3788	0.58	-3.7
4,316,821	+		PP_3788	0.58	-0.8
4,316,822	-		PP_3788	0.58	-2.1
4,316,907	-		PP_3788	0.64	-1.8