Strain Fitness in Pseudomonas putida KT2440 around PP_3751

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
4,279,554	+		PP_3750	0.53	-0.7
4,279,554	+		PP_3750	0.53	-1.5
4,279,555	-		PP_3750	0.53	+0.1
4,279,555	-		PP_3750	0.53	+0.5
4,279,555	-		PP_3750	0.53	+0.9
4,279,665	+		PP_3750	0.60	+0.3
4,279,666	-		PP_3750	0.60	-1.2
4,279,741	-		PP_3750	0.66	+0.2
4,279,741	-		PP_3750	0.66	-1.7
4,279,741	-		PP_3750	0.66	-0.2
4,279,788	+		PP_3750	0.69	+0.9
4,279,795	+		PP_3750	0.69	-1.0
4,279,795	+		PP_3750	0.69	-0.4
4,279,796	-		PP_3750	0.69	-0.1
4,279,810	+		PP_3750	0.70	-0.1
4,279,938	+		PP_3750	0.79	-2.6
4,280,084	+		PP_3750	0.89	+2.1
4,280,085	-		PP_3750	0.90	+1.1
4,280,089	+		PP_3750	0.90	+1.0
4,280,095	+				+1.4
4,280,095	+				+0.5
4,280,095	+				+0.4
4,280,103	+				-0.0
4,280,103	+				+0.0
4,280,104	-				+2.6
4,280,104	-				-0.9
4,280,104	-				-0.2
4,280,149	+				-0.1
4,280,395	-		PP_3751	0.14	+1.9
4,280,395	-		PP_3751	0.14	+0.5
4,280,396	+		PP_3751	0.14	+1.0
4,280,397	-		PP_3751	0.14	+3.4
4,280,397	-		PP_3751	0.14	+0.6
4,280,428	-		PP_3751	0.17	+0.3
4,280,434	+		PP_3751	0.17	-0.4
4,280,747	+		PP_3751	0.43	+1.1
4,280,748	-		PP_3751	0.44	+1.7
4,280,748	-		PP_3751	0.44	+0.9
4,280,777	+		PP_3751	0.46	+0.2
4,280,777	+		PP_3751	0.46	+2.4
4,280,802	-		PP_3751	0.48	+1.6
4,280,933	-		PP_3751	0.59	-0.1
4,280,933	-		PP_3751	0.59	+0.3
4,281,355	-				+2.9
4,281,413	-				-1.0
4,281,413	-				-1.0
4,281,443	-				+0.1
4,281,443	-				-1.2
4,281,573	+				-2.1
4,281,574	-				-1.9
4,281,666	+				-3.5
4,281,736	+				-0.7
4,281,737	-				+0.9
4,281,861	+				-2.6
4,281,861	+				-0.9
4,281,862	-				-1.1
4,281,945	+				-0.1
4,281,945	+				+0.1
4,281,946	-				-0.9
4,281,946	-				+0.8
4,281,946	-				+0.1
4,281,946	-				+1.2
4,281,946	-				+1.0
4,282,088	-				-3.7
4,282,131	-				-3.0
4,282,209	+				-0.2
4,282,210	-				+1.2