Strain Fitness in Pseudomonas putida KT2440 around PP_3579

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
4,060,145	-		PP_3578	0.54	-1.5
4,060,169	-		PP_3578	0.55	+0.8
4,060,169	-		PP_3578	0.55	-2.2
4,060,173	+		PP_3578	0.56	+2.8
4,060,174	-		PP_3578	0.56	-2.4
4,060,264	+		PP_3578	0.61	+0.8
4,060,265	-		PP_3578	0.61	+1.6
4,060,265	-		PP_3578	0.61	+0.9
4,060,265	-		PP_3578	0.61	-2.3
4,060,347	-		PP_3578	0.66	-0.8
4,060,475	+		PP_3578	0.74	-0.0
4,060,549	+		PP_3578	0.79	-0.2
4,060,550	-		PP_3578	0.79	-0.4
4,060,799	+				+1.2
4,060,945	+				+1.7
4,060,945	+				+1.4
4,061,004	+				+2.0
4,061,004	+				+2.1
4,061,005	-				+0.8
4,061,027	-				+0.5
4,061,041	+				+0.8
4,061,041	+				-1.1
4,061,041	+				+1.3
4,061,042	-				-0.5
4,061,042	-				+0.0
4,061,165	-		PP_3579	0.14	-0.5
4,061,210	+		PP_3579	0.21	-1.1
4,061,211	-		PP_3579	0.21	-0.2
4,061,228	+		PP_3579	0.24	-2.1
4,061,403	-		PP_3579	0.51	-0.6
4,061,408	+		PP_3579	0.52	-0.8
4,061,409	-		PP_3579	0.52	+0.8
4,061,409	-		PP_3579	0.52	-1.8
4,061,454	+		PP_3579	0.59	-2.4
4,061,469	-		PP_3579	0.61	+0.7
4,061,690	-				-1.9
4,061,690	-				-0.5
4,061,690	-				+0.0
4,061,717	+				-0.8
4,061,717	+				+2.0
4,061,783	+				-0.9
4,061,783	+				+0.5
4,061,886	+				+0.8
4,061,909	+				-0.2
4,061,910	-				+0.8
4,061,920	-				+0.8
4,061,920	-				+2.8
4,061,920	-				+0.4
4,061,920	-				-0.4
4,061,976	-				-0.7
4,062,178	+		PP_3580	0.75	-0.2
4,062,178	+		PP_3580	0.75	-0.1
4,062,179	-		PP_3580	0.75	+0.7
4,062,233	+				+0.8
4,062,234	-				+0.8
4,062,253	-				+2.8
4,062,334	-				+0.6
4,062,488	+				+1.8
4,062,559	+		PP_3581	0.15	+1.0
4,062,656	-		PP_3581	0.19	+0.5