Strain Fitness in Pseudomonas putida KT2440 around PP_3517

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
3,989,765	+				-0.8
3,989,766	-				-0.6
3,989,794	+				+0.8
3,989,795	-				-0.9
3,989,795	-				-0.3
3,989,956	+		PP_3516	0.25	-0.6
3,989,956	+		PP_3516	0.25	+0.5
3,990,062	-		PP_3516	0.36	+0.0
3,990,151	+		PP_3516	0.45	-2.2
3,990,152	-		PP_3516	0.46	+0.9
3,990,374	-		PP_3516	0.69	+0.5
3,990,374	-		PP_3516	0.69	-0.6
3,990,478	+		PP_3516	0.80	-2.4
3,990,479	-		PP_3516	0.80	+0.8
3,990,486	+		PP_3516	0.80	-0.3
3,990,628	+				+1.1
3,990,628	+				-0.0
3,990,658	-				-0.7
3,990,663	+				+1.5
3,990,664	-				-1.2
3,990,673	+				+1.8
3,990,673	+				+0.2
3,990,673	+				-0.2
3,990,674	-				-0.5
3,990,887	+		PP_3517	0.17	+0.8
3,990,887	+		PP_3517	0.17	-0.5
3,990,944	+		PP_3517	0.24	-0.2
3,990,944	+		PP_3517	0.24	-0.9
3,990,945	-		PP_3517	0.24	-0.8
3,990,945	-		PP_3517	0.24	-0.6
3,990,950	+		PP_3517	0.24	+0.4
3,990,951	-		PP_3517	0.24	-1.6
3,991,007	+		PP_3517	0.31	+3.4
3,991,008	-		PP_3517	0.31	-0.4
3,991,130	+		PP_3517	0.44	-3.1
3,991,170	-		PP_3517	0.49	+0.7
3,991,307	-		PP_3517	0.64	-2.2
3,991,404	+		PP_3517	0.75	-2.2
3,991,404	+		PP_3517	0.75	+0.8
3,991,442	+		PP_3517	0.79	-1.8
3,991,442	+		PP_3517	0.79	+4.4
3,991,442	+		PP_3517	0.79	+4.6
3,991,442	+		PP_3517	0.79	-2.9
3,991,442	+		PP_3517	0.79	+2.8
3,991,443	-		PP_3517	0.79	-3.8
3,991,443	-		PP_3517	0.79	+0.4
3,991,443	-		PP_3517	0.79	-0.6
3,991,727	+				+1.6
3,992,173	+		PP_3518	0.38	+0.9
3,992,258	-		PP_3518	0.44	+1.1
3,992,258	-		PP_3518	0.44	-1.4
3,992,374	+		PP_3518	0.52	+0.8
3,992,374	+		PP_3518	0.52	-3.4
3,992,374	+		PP_3518	0.52	+1.2
3,992,377	+		PP_3518	0.52	-0.2
3,992,377	+		PP_3518	0.52	-0.8
3,992,377	+		PP_3518	0.52	-0.2
3,992,377	+		PP_3518	0.52	+0.3
3,992,377	+		PP_3518	0.52	-1.6
3,992,378	-		PP_3518	0.52	+1.1
3,992,378	-		PP_3518	0.52	-1.7
3,992,378	-		PP_3518	0.52	-0.5
3,992,378	-		PP_3518	0.52	-0.8
3,992,378	-		PP_3518	0.52	-1.8
3,992,378	-		PP_3518	0.52	-0.6
3,992,413	+		PP_3518	0.55	-0.2
3,992,413	+		PP_3518	0.55	+0.5
3,992,413	+		PP_3518	0.55	+0.5
3,992,429	+		PP_3518	0.56	-0.7
3,992,431	+		PP_3518	0.56	-1.1
3,992,431	+				+0.8
3,992,432	-		PP_3518	0.56	+0.8
3,992,432	-		PP_3518	0.56	-0.6
3,992,432	-		PP_3518	0.56	+0.8
3,992,432	-		PP_3518	0.56	+2.3
3,992,443	+		PP_3518	0.57	+0.3
3,992,443	+		PP_3518	0.57	+1.8
3,992,443	+		PP_3518	0.57	+0.9
3,992,443	+		PP_3518	0.57	-1.6
3,992,443	+		PP_3518	0.57	-0.3
3,992,443	+		PP_3518	0.57	-0.7
3,992,443	+		PP_3518	0.57	+0.3
3,992,444	-		PP_3518	0.57	+0.4
3,992,444	-		PP_3518	0.57	+1.8
3,992,444	-		PP_3518	0.57	+0.6
3,992,444	-		PP_3518	0.57	-1.6
3,992,444	-		PP_3518	0.57	-2.1
3,992,444	-		PP_3518	0.57	+0.1
3,992,562	+		PP_3518	0.65	-0.2