Strain Fitness in Pseudomonas putida KT2440 around PP_3424

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
3,874,628	-		PP_3422	0.53	-0.8
3,874,701	+		PP_3422	0.65	-0.8
3,874,712	-		PP_3422	0.67	+0.8
3,874,783	+		PP_3422	0.79	-0.4
3,874,784	-		PP_3422	0.79	-0.6
3,874,784	-		PP_3422	0.79	-1.1
3,874,784	-		PP_3422	0.79	-0.1
3,874,784	-		PP_3422	0.79	-1.9
3,874,784	-		PP_3422	0.79	-0.5
3,874,784	-		PP_3422	0.79	+0.0
3,874,784	-		PP_3422	0.79	-0.3
3,874,784	-		PP_3422	0.79	-1.9
3,874,785	-		PP_3422	0.79	-0.7
3,874,815	+		PP_3422	0.84	-0.4
3,874,815	+		PP_3422	0.84	-0.5
3,874,816	-		PP_3422	0.85	+3.1
3,874,816	-		PP_3422	0.85	-0.5
3,874,819	+		PP_3422	0.85	+0.5
3,874,820	-		PP_3422	0.85	-1.0
3,874,846	+		PP_3422	0.90	-0.0
3,874,846	+		PP_3422	0.90	-2.2
3,874,846	+		PP_3422	0.90	-0.9
3,874,846	+		PP_3422	0.90	-1.1
3,874,846	+		PP_3422	0.90	+0.5
3,874,846	+		PP_3422	0.90	-0.5
3,874,847	-		PP_3422	0.90	+0.8
3,874,893	-				-3.2
3,875,192	+		PP_3423	0.36	+1.2
3,875,192	+		PP_3423	0.36	+0.8
3,875,192	+		PP_3423	0.36	+0.1
3,875,192	+		PP_3423	0.36	-0.8
3,875,193	-		PP_3423	0.36	+0.2
3,875,271	-				+0.8
3,875,271	-		PP_3423	0.51	-0.4
3,875,364	-				+0.8
3,875,405	+		PP_3423	0.78	-0.2
3,875,405	+		PP_3423	0.78	+0.8
3,875,405	+		PP_3423	0.78	-0.8
3,875,405	+		PP_3423	0.78	+0.8
3,875,406	-		PP_3423	0.78	-0.3
3,875,406	-		PP_3423	0.78	+0.4
3,875,406	-		PP_3423	0.78	+0.9
3,875,406	-		PP_3423	0.78	-0.3
3,875,406	-		PP_3423	0.78	+1.2
3,875,406	-		PP_3423	0.78	+0.8
3,875,406	-		PP_3423	0.78	+0.3
3,875,406	-		PP_3423	0.78	-2.2
3,875,406	-		PP_3423	0.78	+1.1
3,875,406	-		PP_3423	0.78	+0.3
3,875,411	+		PP_3423	0.79	-0.1
3,875,412	-		PP_3423	0.79	+0.3
3,875,506	+				-0.3
3,875,507	-				-0.2
3,875,507	-				-0.8
3,875,507	-				+1.5
3,875,517	-				+0.8
3,875,537	-				+1.6
3,875,902	+		PP_3424	0.32	-1.2
3,875,903	-		PP_3424	0.33	+0.8
3,875,903	-		PP_3424	0.33	-1.7
3,875,971	+		PP_3424	0.38	+0.1
3,876,029	+		PP_3424	0.43	-0.0
3,876,125	+		PP_3424	0.51	+0.8
3,876,125	+		PP_3424	0.51	+0.0
3,876,126	-		PP_3424	0.51	+0.1
3,876,248	+		PP_3424	0.61	+0.4
3,876,249	-				-0.2
3,876,311	-		PP_3424	0.66	+0.2
3,876,311	-		PP_3424	0.66	-0.8
3,876,311	-		PP_3424	0.66	-1.1
3,876,682	+				-1.4
3,876,682	+				+4.9
3,876,682	+				+2.1
3,876,682	+				+0.1
3,876,682	+				+3.6
3,876,683	-				+1.3
3,876,683	-				+0.8
3,876,683	-				+0.6
3,876,683	-				+2.8
3,876,683	-				-1.1
3,876,711	+				-1.3
3,876,797	+				+1.0
3,876,797	+				-0.3
3,876,798	-				-2.6
3,876,812	+				+1.3
3,876,813	-				+2.2
3,876,827	+				+0.0
3,876,827	+				+1.4
3,876,828	-				+0.8
3,876,890	+				+2.8
3,876,890	+				-1.8
3,876,891	-				-0.6
3,876,891	-				-0.9
3,876,891	-				+0.6
3,876,891	-				+1.0
3,876,891	-				-1.9
3,876,893	+				+0.2
3,876,893	+				+0.8
3,876,893	+				-1.2
3,876,894	-				+1.1
3,876,894	-				+0.6
3,877,024	+				+0.5
3,877,025	-				-0.5
3,877,539	+		PP_3425	0.50	-0.8
3,877,539	+		PP_3425	0.50	-3.7
3,877,539	+		PP_3425	0.50	+1.8
3,877,539	+		PP_3425	0.50	+0.0
3,877,539	+		PP_3425	0.50	-2.2
3,877,539	+		PP_3425	0.50	-0.7
3,877,540	-		PP_3425	0.51	-2.7
3,877,540	-		PP_3425	0.51	-2.1
3,877,569	+		PP_3425	0.53	-1.8
3,877,569	+		PP_3425	0.53	+0.8
3,877,578	+		PP_3425	0.54	-2.2
3,877,578	+		PP_3425	0.54	+1.3
3,877,578	+		PP_3425	0.54	-0.1
3,877,579	-		PP_3425	0.54	-4.1
3,877,579	-		PP_3425	0.54	-0.1
3,877,627	-		PP_3425	0.58	-0.9
3,877,627	-		PP_3425	0.58	-1.1