Strain Fitness in Pseudomonas putida KT2440 around PP_3402

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
3,853,064	+		PP_3400	0.70	-0.5
3,853,158	-		PP_3400	0.84	-0.6
3,853,185	-		PP_3400	0.88	+2.8
3,853,349	+				+0.8
3,853,350	-				+1.2
3,853,350	-				+2.3
3,853,367	+				+0.8
3,853,367	+				+0.8
3,853,367	+				-0.8
3,853,368	-				-0.7
3,853,413	-				+0.4
3,853,413	-				-2.4
3,853,425	+				-1.2
3,853,425	+				-2.2
3,853,426	-				+0.8
3,853,426	-				+2.0
3,853,426	-				+1.0
3,853,426	-				+0.0
3,853,433	+				+0.9
3,853,475	+		PP_3401	0.16	+1.2
3,853,475	+		PP_3401	0.16	-0.3
3,853,476	-		PP_3401	0.16	+0.3
3,853,476	-		PP_3401	0.16	+1.8
3,853,646	+		PP_3401	0.75	-1.2
3,853,647	-		PP_3401	0.75	-0.6
3,853,715	+				+0.8
3,853,716	-				+3.1
3,853,716	-				-1.4
3,853,716	-				+0.1
3,853,756	+				-1.4
3,853,756	+				+0.5
3,853,756	+				+2.3
3,853,757	-				+0.3
3,853,757	-				-0.2
3,853,757	-				-0.2
3,853,757	-				-0.5
3,853,757	-				+2.1
3,853,832	-				+1.2
3,853,832	-				+0.0
3,854,033	+		PP_3402	0.59	-2.4
3,854,033	+		PP_3402	0.59	-0.8
3,854,033	+		PP_3402	0.59	-1.3
3,854,034	-		PP_3402	0.59	+0.6
3,854,039	-		PP_3402	0.61	+0.4
3,854,062	+		PP_3402	0.66	-0.5
3,854,062	+		PP_3402	0.66	+0.4
3,854,062	+		PP_3402	0.66	-0.3
3,854,062	+		PP_3402	0.66	-2.0
3,854,063	-		PP_3402	0.67	+0.6
3,854,091	+		PP_3402	0.74	-1.8
3,854,091	+		PP_3402	0.74	-0.6
3,854,091	+		PP_3402	0.74	-3.6
3,854,091	+		PP_3402	0.74	+0.0
3,854,092	-		PP_3402	0.74	-2.3
3,854,092	-		PP_3402	0.74	-0.5
3,854,092	-		PP_3402	0.74	-1.8
3,854,129	+		PP_3402	0.83	+2.7
3,854,130	-		PP_3402	0.84	-0.9
3,854,130	-		PP_3402	0.84	-1.1
3,854,189	+				+1.6
3,854,189	+				-0.5
3,854,190	-				+1.3
3,854,190	-				-0.5
3,854,198	-				-0.6
3,854,238	+				-0.8
3,854,238	+				+2.3
3,854,238	+				+0.7
3,854,239	-				-1.1
3,854,239	-				+0.4
3,854,239	-				-3.8
3,854,239	-				-0.1
3,854,247	+				+0.7
3,854,271	+				+0.2
3,854,272	-				+3.1
3,854,272	-				-0.8
3,854,499	-		PP_3403	0.21	-1.2
3,854,499	-		PP_3403	0.21	+2.8
3,854,499	-		PP_3403	0.21	-1.2
3,854,499	-		PP_3403	0.21	-1.8
3,854,499	-		PP_3403	0.21	-1.7
3,854,504	+		PP_3403	0.21	+2.8
3,854,504	+		PP_3403	0.21	+2.0
3,854,504	+		PP_3403	0.21	-1.0
3,854,504	+		PP_3403	0.21	+0.5
3,854,505	-		PP_3403	0.21	-0.2
3,854,505	-		PP_3403	0.21	+0.6
3,854,505	-		PP_3403	0.21	-2.0
3,854,505	-		PP_3403	0.21	-1.7
3,854,505	-		PP_3403	0.21	+3.0
3,854,505	-		PP_3403	0.21	+1.3
3,854,505	-		PP_3403	0.21	+2.0
3,854,526	-		PP_3403	0.24	+0.4
3,854,704	-		PP_3403	0.44	-1.2
3,854,985	+		PP_3403	0.75	-2.5
3,854,985	+		PP_3403	0.75	-1.2