Strain Fitness in Pseudomonas putida KT2440 around PP_3397

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
3,847,271	+		PP_3396	0.27	-1.6
3,847,271	+		PP_3396	0.27	-0.0
3,847,272	-		PP_3396	0.27	+1.6
3,847,272	-		PP_3396	0.27	+0.5
3,847,379	+		PP_3396	0.35	-0.0
3,847,379	+		PP_3396	0.35	+0.4
3,847,379	+		PP_3396	0.35	-2.0
3,847,379	+		PP_3396	0.35	+0.3
3,847,380	-		PP_3396	0.35	+0.8
3,847,380	-		PP_3396	0.35	-0.0
3,847,380	-		PP_3396	0.35	+0.8
3,847,380	-		PP_3396	0.35	-0.4
3,847,397	+		PP_3396	0.37	+0.8
3,847,398	-		PP_3396	0.37	+0.5
3,847,619	+		PP_3396	0.53	+0.3
3,847,619	+		PP_3396	0.53	+1.2
3,847,619	+		PP_3396	0.53	-2.8
3,847,620	-		PP_3396	0.53	+2.3
3,847,620	-		PP_3396	0.53	-0.2
3,847,733	+		PP_3396	0.62	-0.1
3,847,734	-		PP_3396	0.62	+0.3
3,847,874	+		PP_3396	0.72	-0.6
3,848,076	+		PP_3396	0.88	-0.8
3,848,080	+		PP_3396	0.88	-0.4
3,848,081	-		PP_3396	0.88	-1.9
3,848,089	+		PP_3396	0.89	-1.4
3,848,089	+		PP_3396	0.89	-1.6
3,848,090	-		PP_3396	0.89	-0.6
3,848,319	+				-0.6
3,848,320	-				-0.3
3,848,320	-				-0.1
3,848,371	+				+2.4
3,848,371	+				-0.3
3,848,372	-				-0.1
3,848,492	-		PP_3397	0.11	-0.3
3,848,492	-		PP_3397	0.11	+3.8
3,848,492	-		PP_3397	0.11	-1.0
3,848,525	-		PP_3397	0.13	-0.8
3,848,546	+		PP_3397	0.14	+1.9
3,848,556	+		PP_3397	0.14	-1.8
3,848,556	+		PP_3397	0.14	-2.2
3,848,623	+		PP_3397	0.17	+0.7
3,848,624	-		PP_3397	0.17	-0.2
3,848,638	+		PP_3397	0.18	-0.5
3,848,638	+		PP_3397	0.18	-0.2
3,848,650	-		PP_3397	0.18	+0.8
3,848,651	+		PP_3397	0.18	-0.5
3,848,651	+		PP_3397	0.18	-2.7
3,848,652	-		PP_3397	0.18	-1.2
3,848,652	-		PP_3397	0.18	+1.0
3,848,742	+		PP_3397	0.22	+1.9
3,848,746	+		PP_3397	0.22	+0.8
3,848,746	+		PP_3397	0.22	+0.4
3,848,747	-		PP_3397	0.23	-2.0
3,848,747	-		PP_3397	0.23	+1.8
3,848,765	-		PP_3397	0.23	+0.1
3,848,908	+		PP_3397	0.30	+0.2
3,848,908	+		PP_3397	0.30	+0.8
3,848,908	+		PP_3397	0.30	-0.8
3,848,910	+		PP_3397	0.30	-0.3
3,848,910	+		PP_3397	0.30	+1.9
3,848,910	+		PP_3397	0.30	-1.6
3,848,910	+		PP_3397	0.30	-3.0
3,848,910	+		PP_3397	0.30	-2.0
3,848,910	+		PP_3397	0.30	-2.6
3,848,911	-		PP_3397	0.30	+1.6
3,848,911	-		PP_3397	0.30	-3.3
3,848,911	-		PP_3397	0.30	-1.6
3,848,911	-		PP_3397	0.30	+0.6
3,848,911	-		PP_3397	0.30	+0.6
3,848,964	+		PP_3397	0.32	+2.8
3,849,115	+		PP_3397	0.39	+2.0
3,849,397	+		PP_3397	0.51	+0.3
3,849,398	-		PP_3397	0.51	-0.6
3,849,449	+		PP_3397	0.53	+0.5
3,849,449	+		PP_3397	0.53	+0.8
3,849,450	-		PP_3397	0.54	-2.0
3,849,666	+		PP_3397	0.63	+0.4
3,849,666	+		PP_3397	0.63	-1.3
3,849,667	-		PP_3397	0.63	+0.2
3,849,805	-		PP_3397	0.69	-0.7
3,849,808	+		PP_3397	0.69	+0.8
3,849,808	+		PP_3397	0.69	+0.9
3,849,809	-		PP_3397	0.69	-1.4
3,850,096	+		PP_3397	0.82	+0.8
3,850,096	+		PP_3397	0.82	-0.1
3,850,096	+		PP_3397	0.82	+1.8
3,850,096	+		PP_3397	0.82	+1.2
3,850,096	+		PP_3397	0.82	+1.4
3,850,096	+		PP_3397	0.82	+0.3
3,850,097	-		PP_3397	0.82	+0.7
3,850,098	+		PP_3397	0.82	-2.6
3,850,145	-		PP_3397	0.84	+2.0
3,850,145	-		PP_3397	0.84	+0.6
3,850,185	+		PP_3397	0.86	+2.4
3,850,185	+		PP_3397	0.86	-1.3
3,850,185	+		PP_3397	0.86	-1.0
3,850,407	-				+0.1
3,850,413	+				+0.6
3,850,413	+				-1.0
3,850,413	+				-0.2
3,850,490	+				+0.4
3,850,490	+				-0.1
3,850,491	-				+0.8
3,850,501	+				-1.4
3,850,502	-				+0.4
3,850,531	+				+0.6
3,850,532	-				-1.2
3,850,775	-		PP_3398	0.54	+0.4
3,850,775	-		PP_3398	0.54	+1.4
3,850,775	-		PP_3398	0.54	-0.0
3,850,985	-				-2.1
3,851,012	+				+0.4
3,851,013	-				-2.4
3,851,013	-				+1.2
3,851,013	-				-1.1
3,851,013	-				-0.5
3,851,013	-				-2.0
3,851,312	+		PP_3399	0.21	-2.8
3,851,313	-		PP_3399	0.21	+0.9
3,851,313	-		PP_3399	0.21	-1.4