Strain Fitness in Pseudomonas putida KT2440 around PP_3394

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
3,843,709	-		PP_3393	0.18	+1.9
3,843,709	-		PP_3393	0.18	+2.1
3,843,709	-		PP_3393	0.18	-0.0
3,843,873	-		PP_3393	0.32	-1.0
3,843,921	+		PP_3393	0.36	+0.8
3,843,994	+		PP_3393	0.42	+1.8
3,843,994	+		PP_3393	0.42	+0.1
3,843,994	+		PP_3393	0.42	-1.2
3,843,995	-		PP_3393	0.42	-1.8
3,843,995	-		PP_3393	0.42	+1.1
3,844,054	+		PP_3393	0.47	+0.4
3,844,054	+		PP_3393	0.47	-0.4
3,844,055	-		PP_3393	0.48	+0.9
3,844,055	-		PP_3393	0.48	-1.4
3,844,064	+		PP_3393	0.48	+0.6
3,844,064	+		PP_3393	0.48	+0.9
3,844,065	-		PP_3393	0.48	-0.8
3,844,065	-		PP_3393	0.48	-0.2
3,844,065	-		PP_3393	0.48	+0.5
3,844,065	-		PP_3393	0.48	-0.2
3,844,065	-		PP_3393	0.48	+1.0
3,844,096	+		PP_3393	0.51	+1.5
3,844,244	-		PP_3393	0.63	-0.7
3,844,266	+		PP_3393	0.65	-3.6
3,844,267	-		PP_3393	0.65	-2.0
3,844,297	+		PP_3393	0.68	-3.8
3,844,297	+		PP_3393	0.68	+0.8
3,844,298	-		PP_3393	0.68	-1.4
3,844,330	+		PP_3393	0.71	-3.2
3,844,330	+		PP_3393	0.71	-0.6
3,844,331	-		PP_3393	0.71	-0.6
3,844,367	-		PP_3393	0.74	+4.1
3,844,388	+		PP_3393	0.75	+0.4
3,844,389	-		PP_3393	0.76	-0.8
3,844,389	-		PP_3393	0.76	+0.7
3,844,631	+				-1.2
3,844,632	-				-0.8
3,844,794	+				+0.8
3,844,794	+				-0.7
3,844,795	-				+3.9
3,844,795	-				-0.6
3,844,797	+		PP_3394	0.10	+4.4
3,844,797	+		PP_3394	0.10	-2.1
3,844,798	-		PP_3394	0.10	+0.8
3,844,798	-		PP_3394	0.10	-0.1
3,844,816	-		PP_3394	0.12	-1.9
3,844,886	+		PP_3394	0.20	-1.1
3,844,887	-		PP_3394	0.20	-1.1
3,844,887	-		PP_3394	0.20	+0.0
3,844,887	-		PP_3394	0.20	+2.4
3,845,089	+		PP_3394	0.41	+0.1
3,845,249	+		PP_3394	0.59	-2.0
3,845,412	+		PP_3394	0.76	-2.6
3,845,623	-				+0.5
3,845,623	-				-0.3
3,845,623	-				+0.4
3,845,667	+				-1.4
3,845,667	+				-1.8
3,845,668	-				-0.7
3,845,952	-		PP_3395	0.23	+0.2
3,845,952	-		PP_3395	0.23	+0.0
3,845,975	+		PP_3395	0.25	+1.8
3,845,975	+		PP_3395	0.25	+0.0
3,845,976	-		PP_3395	0.25	+0.8
3,845,976	-		PP_3395	0.25	-1.6
3,845,976	-		PP_3395	0.25	+2.4
3,846,068	+		PP_3395	0.35	-0.8
3,846,201	+		PP_3395	0.49	+0.3
3,846,201	+		PP_3395	0.49	-0.2
3,846,201	+		PP_3395	0.49	-1.3
3,846,285	-		PP_3395	0.57	-0.5
3,846,337	+		PP_3395	0.63	-0.8
3,846,337	+		PP_3395	0.63	-0.2
3,846,338	-		PP_3395	0.63	+0.1
3,846,338	-		PP_3395	0.63	+0.8
3,846,381	-		PP_3395	0.67	+1.1
3,846,381	-		PP_3395	0.67	-0.2
3,846,534	+		PP_3395	0.83	+3.3
3,846,535	-		PP_3395	0.83	+0.4
3,846,535	-		PP_3395	0.83	+4.1
3,846,535	-		PP_3395	0.83	+3.3