Strain Fitness in Pseudomonas putida KT2440 around PP_3376

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
3,819,932	+				+1.7
3,819,941	+				+3.6
3,819,942	-				+1.4
3,820,022	-				+0.7
3,820,057	+		PP_3375	0.15	+0.7
3,820,057	+		PP_3375	0.15	+0.7
3,820,057	+		PP_3375	0.15	-1.5
3,820,336	+		PP_3375	0.44	+0.1
3,820,336	+		PP_3375	0.44	-1.3
3,820,336	+		PP_3375	0.44	+0.3
3,820,337	-		PP_3375	0.44	-2.0
3,820,367	-		PP_3375	0.47	+1.0
3,820,367	-		PP_3375	0.47	-1.5
3,820,456	+		PP_3375	0.57	+0.7
3,820,456	+		PP_3375	0.57	-0.3
3,820,457	-		PP_3375	0.57	-0.2
3,820,457	-		PP_3375	0.57	-0.4
3,820,471	+		PP_3375	0.58	+4.1
3,820,655	+		PP_3375	0.77	-3.7
3,820,655	+		PP_3375	0.77	-0.6
3,820,756	+		PP_3375	0.88	+0.7
3,820,756	+		PP_3375	0.88	+0.3
3,820,756	+		PP_3375	0.88	+0.2
3,820,757	-		PP_3375	0.88	-1.2
3,821,038	+		PP_3376	0.12	-2.1
3,821,039	-		PP_3376	0.13	-3.5
3,821,046	+		PP_3376	0.13	-2.2
3,821,189	-		PP_3376	0.28	-4.5
3,821,227	+		PP_3376	0.32	-3.8
3,821,227	+		PP_3376	0.32	-1.6
3,821,321	+		PP_3376	0.42	-4.1
3,821,322	-		PP_3376	0.42	-1.8
3,821,322	-		PP_3376	0.42	-2.7
3,821,437	+		PP_3376	0.54	-3.9
3,821,438	-		PP_3376	0.54	-1.8
3,821,643	-		PP_3376	0.75	-3.7
3,821,856	+				-1.3
3,821,858	+				+1.3
3,821,950	+				+0.2
3,821,951	-				-1.1
3,821,951	-				+1.3
3,822,006	+				-0.1
3,822,007	-				+0.5
3,822,007	-				+3.6
3,822,043	-		PP_3377	0.12	+0.1
3,822,162	+		PP_3377	0.21	+0.7
3,822,171	+		PP_3377	0.22	-1.3
3,822,171	+		PP_3377	0.22	-0.6
3,822,171	+				+0.7
3,822,171	+		PP_3377	0.22	-2.4
3,822,172	-		PP_3377	0.22	+0.5
3,822,172	-		PP_3377	0.22	-0.5
3,822,172	-		PP_3377	0.22	+0.3
3,822,172	-		PP_3377	0.22	+1.7
3,822,204	+		PP_3377	0.24	-3.2
3,822,204	+		PP_3377	0.24	+0.5
3,822,204	+		PP_3377	0.24	+1.6
3,822,237	+		PP_3377	0.27	+3.2
3,822,237	+		PP_3377	0.27	-0.3
3,822,237	+		PP_3377	0.27	+1.4
3,822,238	-		PP_3377	0.27	-0.3
3,822,238	-		PP_3377	0.27	+0.7
3,822,246	+		PP_3377	0.27	-2.3
3,822,246	+		PP_3377	0.27	+1.3
3,822,246	+		PP_3377	0.27	-0.2
3,822,246	+		PP_3377	0.27	-0.0
3,822,247	-		PP_3377	0.28	-1.0
3,822,247	-		PP_3377	0.28	+0.3
3,822,247	-		PP_3377	0.28	+1.5
3,822,247	-		PP_3377	0.28	-0.6
3,822,441	+		PP_3377	0.43	-0.1
3,822,442	-		PP_3377	0.43	-0.6
3,822,466	-		PP_3377	0.44	-3.8
3,822,466	-		PP_3377	0.44	-1.2
3,822,466	-		PP_3377	0.44	+0.3
3,822,513	+		PP_3377	0.48	-2.2
3,822,513	+		PP_3377	0.48	+0.2
3,822,514	-		PP_3377	0.48	+1.7
3,822,521	+		PP_3377	0.49	+0.5
3,822,521	+		PP_3377	0.49	-0.5
3,822,522	-		PP_3377	0.49	-2.6
3,822,533	-		PP_3377	0.50	-4.3
3,822,533	-		PP_3377	0.50	-0.6
3,822,691	-		PP_3377	0.62	+0.5
3,822,691	-		PP_3377	0.62	+0.7
3,822,807	+				-0.3
3,822,807	+		PP_3377	0.71	-1.3
3,822,808	-		PP_3377	0.71	-0.5
3,822,876	+		PP_3377	0.76	-1.3
3,822,877	-		PP_3377	0.76	+0.4