Strain Fitness in Pseudomonas putida KT2440 around PP_3033

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
3,418,580	+				+0.5
3,418,673	+		PP_3032	0.35	-1.0
3,418,865	+				-0.5
3,418,880	-				-0.9
3,418,880	-				-1.5
3,418,882	+				-0.5
3,418,883	-				-1.8
3,418,883	-				-0.8
3,418,932	+		PP_5552	0.22	-0.2
3,419,137	-		PP_5552	0.88	+3.4
3,419,168	+				-1.3
3,419,195	-		PP_5553	0.13	-1.1
3,419,195	-		PP_5553	0.13	+3.9
3,419,228	+		PP_5553	0.32	-1.0
3,419,229	-		PP_5553	0.33	-1.0
3,419,241	-		PP_5553	0.40	+0.2
3,419,241	-		PP_5553	0.40	-4.6
3,419,241	-		PP_5553	0.40	+0.8
3,419,292	+		PP_5553	0.69	-0.1
3,419,325	+		PP_5553	0.88	+1.5
3,419,325	+		PP_5553	0.88	-0.3
3,419,325	+		PP_5553	0.88	-1.4
3,419,325	+				+1.4
3,419,325	+		PP_5553	0.88	-0.5
3,419,326	-		PP_5553	0.89	-1.4
3,419,326	-				+0.8
3,419,326	-		PP_5553	0.89	-3.9
3,419,326	-		PP_5553	0.89	-0.8
3,419,326	-		PP_5553	0.89	+0.1
3,419,348	+				+0.1
3,419,348	+				-1.4
3,420,352	-		PP_3034	0.34	-3.2
3,420,357	-				-0.8
3,420,357	-		PP_3034	0.36	-0.4
3,420,398	-		PP_3034	0.51	-1.0
3,420,408	-		PP_3034	0.55	-1.8
3,420,525	-				-1.5
3,420,565	-		PP_3035	0.74	-2.4
3,420,565	-		PP_3035	0.74	-2.4
3,420,727	-				-1.0
3,420,730	-				+1.6
3,420,730	-				-3.2
3,420,758	-		PP_5554	0.21	+0.8
3,420,791	-		PP_5554	0.39	-2.5
3,420,791	-		PP_5554	0.39	+1.8
3,420,800	-		PP_5554	0.44	-1.1
3,420,800	-		PP_5554	0.44	-0.4
3,420,800	-		PP_5554	0.44	+2.8
3,420,800	-		PP_5554	0.44	+0.8
3,420,800	-		PP_5554	0.44	-1.5
3,420,800	-		PP_5554	0.44	-1.2
3,420,800	-		PP_5554	0.44	+0.0
3,420,800	-		PP_5554	0.44	-2.2
3,420,881	-		PP_5554	0.89	+0.8
3,420,885	-				+1.0
3,420,902	-				+0.9
3,420,902	-				-0.0
3,420,902	-				-0.4
3,420,902	-				-0.2
3,420,902	-				-0.0
3,420,933	+				+1.7
3,420,977	-				-0.1
3,421,054	+		PP_3036	0.45	-0.5
3,421,055	-		PP_3036	0.46	+3.6
3,421,055	-		PP_3036	0.46	+0.9
3,421,055	-		PP_3036	0.46	-0.8
3,421,055	-		PP_3036	0.46	+0.9
3,421,062	+		PP_3036	0.49	-0.9
3,421,063	-		PP_3036	0.50	-2.5