Strain Fitness in Pseudomonas putida KT2440 around PP_2968

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
3,369,708	-				-0.9
3,369,758	-		PP_2965	0.11	+0.2
3,369,776	+		PP_2965	0.16	-0.0
3,369,776	+		PP_2965	0.16	-0.9
3,369,776	+		PP_2965	0.16	+0.8
3,369,777	-		PP_2965	0.16	-2.7
3,369,777	-		PP_2965	0.16	-1.2
3,369,860	+		PP_2965	0.39	+0.8
3,369,861	-		PP_2965	0.39	-0.2
3,369,903	-		PP_2965	0.51	-0.8
3,369,923	+		PP_2965	0.56	+0.8
3,369,923	+		PP_2965	0.56	+1.1
3,369,924	-		PP_2965	0.57	+2.6
3,369,944	+		PP_2965	0.62	-1.8
3,369,944	+		PP_2965	0.62	-0.6
3,369,944	+		PP_2965	0.62	+0.8
3,369,945	-		PP_2965	0.63	+2.5
3,369,945	-		PP_2965	0.63	+2.9
3,369,945	-		PP_2965	0.63	+0.4
3,369,945	-		PP_2965	0.63	-0.7
3,369,948	+		PP_2965	0.63	+2.4
3,369,948	+		PP_2965	0.63	-2.6
3,369,948	+		PP_2965	0.63	+2.8
3,370,040	+		PP_2965	0.89	-0.3
3,370,040	+		PP_2965	0.89	+0.1
3,370,059	-				-3.8
3,370,079	-				-2.2
3,370,098	+				+0.2
3,370,098	+				+0.4
3,370,098	+				-3.7
3,370,099	-				+1.6
3,370,099	-				-2.4
3,370,099	-				+0.2
3,370,100	+				-0.6
3,370,100	+				-0.7
3,370,105	+				-1.6
3,370,106	-				-1.0
3,370,106	-				+0.0
3,370,106	-				-1.1
3,370,146	-				+0.2
3,370,170	+				+1.5
3,370,170	+				+1.1
3,370,170	+				-0.2
3,370,260	-				-1.9
3,370,271	+				-2.2
3,370,272	-				+0.8
3,370,307	+				-1.0
3,370,327	+				-2.4
3,370,327	+				+1.8
3,370,327	+				+0.6
3,370,327	+				+0.4
3,370,328	-				-1.6
3,370,328	-				-0.2
3,370,330	+				+1.1
3,370,330	+				+0.3
3,370,330	+				+1.0
3,370,330	+				+1.5
3,370,331	-				+1.5
3,370,331	-				+2.0
3,370,331	-				-2.1
3,370,331	-				+0.2
3,370,331	-				-1.7
3,370,331	-				+0.3
3,370,331	-				-2.0
3,370,331	-				+0.8
3,370,331	-				+0.2
3,370,334	+				-0.2
3,370,335	-				-1.3
3,370,335	-				+0.5
3,370,375	-				+0.2
3,370,375	-				-1.6
3,370,474	-				+1.1
3,370,481	+				+3.2
3,370,482	-				+0.9
3,370,482	-				+0.7
3,370,525	-				-1.5
3,370,617	+				-3.2
3,370,626	-				-1.8
3,370,678	+				-1.0
3,370,701	+				+1.8
3,370,701	+				+3.8
3,370,701	+				-1.1
3,370,714	+				-0.6
3,370,872	+		PP_2968	0.20	+0.5
3,370,873	-		PP_2968	0.20	-2.0
3,370,873	-		PP_2968	0.20	+0.8
3,370,970	+		PP_2968	0.29	+0.4
3,371,104	+		PP_2968	0.41	-0.8
3,371,104	+		PP_2968	0.41	+5.1
3,371,105	-		PP_2968	0.41	-0.8
3,371,289	-		PP_2968	0.57	-1.2
3,371,289	-		PP_2968	0.57	+2.4
3,371,386	+		PP_2968	0.66	-2.0
3,371,387	-		PP_2968	0.66	+2.4
3,371,387	-		PP_2968	0.66	+4.1
3,371,387	-		PP_2968	0.66	+0.4
3,371,474	+		PP_2968	0.73	+0.4
3,371,474	+		PP_2968	0.73	-3.9
3,371,475	-		PP_2968	0.74	-1.0
3,371,475	-		PP_2968	0.74	+1.8
3,371,478	+		PP_2968	0.74	-0.4
3,371,478	+		PP_2968	0.74	-0.1
3,371,478	+		PP_2968	0.74	+3.4
3,371,478	+		PP_2968	0.74	+0.5
3,371,479	-		PP_2968	0.74	+2.5
3,371,479	-		PP_2968	0.74	-0.0
3,371,479	-		PP_2968	0.74	+0.4
3,371,479	-		PP_2968	0.74	-0.3
3,371,479	-		PP_2968	0.74	+1.6
3,371,503	+		PP_2968	0.76	+1.0
3,371,542	+		PP_2968	0.79	+0.4
3,371,543	-		PP_2968	0.80	+0.6
3,371,543	-		PP_2968	0.80	+1.1
3,371,543	-		PP_2968	0.80	+0.8
3,371,646	-		PP_2968	0.89	+0.8
3,371,682	+				+0.0
3,371,722	+				+0.4
3,371,722	+				-1.7
3,371,722	+				-1.7
3,371,723	-				+1.2
3,371,723	-				+1.1
3,371,723	-				-3.4
3,371,786	+				-0.4
3,371,786	+				+0.9
3,371,792	+				+1.2
3,371,793	-				-0.1
3,371,796	+				-1.0
3,371,797	-				+0.2
3,371,797	-				-0.0
3,371,878	-		PP_2969	0.32	-0.3
3,371,889	+		PP_2969	0.36	-1.7
3,372,028	-		PP_2969	0.84	+2.3
3,372,028	-		PP_2969	0.84	-2.8
3,372,028	-		PP_2969	0.84	+0.8
3,372,033	+		PP_2969	0.86	-0.7
3,372,033	+		PP_2969	0.86	+1.0
3,372,034	-		PP_2969	0.86	-1.5
3,372,100	-				+0.8
3,372,144	+				-0.1
3,372,145	-				+0.5
3,372,145	-				+3.8
3,372,169	+				+1.4
3,372,169	+				-1.1
3,372,214	+				-0.9
3,372,214	+				+5.0
3,372,215	-				+0.5
3,372,249	+		PP_2970	0.16	-0.2
3,372,460	+		PP_2970	0.75	+1.0
3,372,460	+		PP_2970	0.75	+3.1
3,372,461	-		PP_2970	0.75	+0.5
3,372,486	-		PP_2970	0.82	+0.3
3,372,553	+				-0.3
3,372,581	+				+1.9
3,372,582	-				+0.3
3,372,656	+				+0.7
3,372,656	+				-0.8
3,372,659	+				-2.1