Strain Fitness in Pseudomonas putida KT2440 around PP_2914

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
3,313,789	+				+0.8
3,313,790	-				+2.6
3,313,898	-				+0.2
3,313,898	-				+1.4
3,313,902	-				+0.8
3,313,915	-				+0.2
3,313,926	+				+1.7
3,314,084	+				+0.8
3,314,085	-				-1.7
3,314,085	-				+1.3
3,314,086	+				-1.2
3,314,087	-				-0.2
3,314,087	-				+1.4
3,314,101	+				+3.1
3,314,102	-				-0.3
3,314,303	+		PP_2914	0.23	+0.2
3,314,311	+		PP_2914	0.24	-1.8
3,314,312	-		PP_2914	0.24	-1.7
3,314,312	-		PP_2914	0.24	+0.2
3,314,325	+		PP_2914	0.25	-1.5
3,314,389	+		PP_2914	0.29	-1.4
3,314,390	-		PP_2914	0.29	-1.8
3,314,390	-		PP_2914	0.29	-1.1
3,314,486	+		PP_2914	0.35	+0.8
3,314,486	+		PP_2914	0.35	-1.1
3,314,780	-		PP_2914	0.55	-0.2
3,314,780	-		PP_2914	0.55	-1.1
3,314,782	+		PP_2914	0.55	-1.2
3,314,782	+		PP_2914	0.55	-0.8
3,314,782	+		PP_2914	0.55	-0.6
3,314,783	-		PP_2914	0.55	-0.1
3,314,783	-		PP_2914	0.55	-0.9
3,314,783	-		PP_2914	0.55	+1.6
3,314,783	-		PP_2914	0.55	+0.5
3,314,794	-		PP_2914	0.56	-2.2
3,314,794	-		PP_2914	0.56	-0.5
3,314,797	+		PP_2914	0.56	-0.5
3,314,797	+		PP_2914	0.56	-1.9
3,314,797	+		PP_2914	0.56	-0.5
3,314,797	+		PP_2914	0.56	+1.8
3,314,797	+		PP_2914	0.56	-2.3
3,314,798	-		PP_2914	0.56	-0.6
3,314,798	-		PP_2914	0.56	+0.9
3,314,809	+		PP_2914	0.57	-4.2
3,314,830	+		PP_2914	0.58	-0.3
3,315,008	+		PP_2914	0.70	-0.5
3,315,008	+		PP_2914	0.70	-1.8
3,315,009	-		PP_2914	0.70	+0.9
3,315,016	-		PP_2914	0.71	-2.7
3,315,112	+		PP_2914	0.77	+0.2
3,315,208	+		PP_2914	0.83	+0.8
3,315,208	+		PP_2914	0.83	-0.2
3,315,208	+		PP_2914	0.83	+0.5
3,315,209	-		PP_2914	0.83	+0.5
3,315,224	-		PP_2914	0.84	+0.7
3,315,471	-				-2.0
3,315,471	-				-0.4
3,315,471	-				-0.9
3,315,704	+		PP_2915	0.35	-1.8
3,315,994	-				+0.8
3,316,106	-				+2.0
3,316,197	+				-0.8
3,316,216	+				-2.4
3,316,217	-				+0.8
3,316,280	+		PP_2916	0.18	-0.7
3,316,281	-		PP_2916	0.18	+0.3
3,316,281	-		PP_2916	0.18	-2.2
3,316,403	+		PP_2916	0.37	-0.9
3,316,403	+		PP_2916	0.37	-0.4
3,316,403	+		PP_2916	0.37	+1.3
3,316,404	-		PP_2916	0.37	+0.3