Strain Fitness in Pseudomonas putida KT2440 around PP_2854

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
3,256,225	+		PP_2853	0.27	-0.5
3,256,225	+		PP_2853	0.27	+0.2
3,256,225	+		PP_2853	0.27	-0.1
3,256,225	+		PP_2853	0.27	+0.3
3,256,226	-		PP_2853	0.28	+0.7
3,256,226	-		PP_2853	0.28	-1.6
3,256,226	-		PP_2853	0.28	-1.5
3,256,232	-		PP_2853	0.28	+0.9
3,256,232	-		PP_2853	0.28	-2.3
3,256,302	+		PP_2853	0.33	-1.5
3,256,302	+		PP_2853	0.33	-0.1
3,256,302	+		PP_2853	0.33	-0.4
3,256,302	+		PP_2853	0.33	-0.8
3,256,302	+		PP_2853	0.33	-0.4
3,256,302	+		PP_2853	0.33	+2.4
3,256,303	-		PP_2853	0.34	+0.9
3,256,303	-		PP_2853	0.34	-0.3
3,256,303	-		PP_2853	0.34	-0.1
3,256,303	-		PP_2853	0.34	+1.7
3,256,303	-		PP_2853	0.34	-0.9
3,256,378	+		PP_2853	0.39	-2.7
3,256,555	+		PP_2853	0.53	+2.7
3,256,555	+		PP_2853	0.53	-0.2
3,256,575	+		PP_2853	0.55	-1.2
3,256,616	+		PP_2853	0.58	+0.1
3,256,616	+		PP_2853	0.58	-0.6
3,256,618	+		PP_2853	0.58	+0.3
3,256,619	-		PP_2853	0.58	-0.1
3,256,619	-		PP_2853	0.58	+0.5
3,256,736	-		PP_2853	0.67	+0.4
3,256,736	-		PP_2853	0.67	-0.4
3,256,736	-		PP_2853	0.67	+0.6
3,256,744	+		PP_2853	0.68	+0.7
3,256,744	+		PP_2853	0.68	+1.1
3,256,744	+		PP_2853	0.68	-0.3
3,256,744	+		PP_2853	0.68	+1.3
3,256,744	+		PP_2853	0.68	+0.2
3,256,744	+		PP_2853	0.68	+1.2
3,256,744	+		PP_2853	0.68	-0.3
3,256,745	-		PP_2853	0.68	+0.3
3,256,745	-		PP_2853	0.68	-0.6
3,256,745	-		PP_2853	0.68	-0.4
3,256,745	-		PP_2853	0.68	+4.6
3,256,745	-		PP_2853	0.68	-2.6
3,256,804	+		PP_2853	0.73	-2.6
3,256,805	-		PP_2853	0.73	+0.2
3,257,024	-		PP_2853	0.90	+0.7
3,257,150	-				+0.3
3,257,175	+				-1.4
3,257,176	-				-0.5
3,257,176	-				-0.8
3,257,196	+				-0.7
3,257,488	+		PP_2854	0.38	-1.5
3,257,541	+		PP_2854	0.45	+0.1
3,257,556	-		PP_2854	0.47	-0.8
3,257,705	+		PP_2854	0.67	+1.5
3,257,705	+		PP_2854	0.67	+0.7
3,257,706	-				+0.8
3,257,706	-		PP_2854	0.67	+1.4
3,257,788	-		PP_2854	0.78	+0.9
3,257,788	-		PP_2854	0.78	+1.0
3,257,834	+		PP_2854	0.84	+3.0
3,257,953	-				+0.2
3,257,987	+				-0.3
3,258,188	+		PP_2855	0.28	-0.2
3,258,189	-		PP_2855	0.28	-0.4
3,258,189	-		PP_2855	0.28	-0.1
3,258,221	+		PP_2855	0.33	+0.3
3,258,221	+		PP_2855	0.33	+1.9
3,258,222	-		PP_2855	0.33	+1.1
3,258,222	-		PP_2855	0.33	+1.1
3,258,222	-		PP_2855	0.33	-0.4
3,258,266	+		PP_2855	0.39	+1.8
3,258,289	+		PP_2855	0.43	-1.4
3,258,473	+		PP_2855	0.70	-0.2
3,258,474	-		PP_2855	0.70	-2.3
3,258,692	-				-0.1
3,258,801	-				-1.8
3,258,862	+				-2.7
3,258,910	+		PP_2856	0.12	-0.7
3,258,911	-		PP_2856	0.12	-0.1
3,258,911	-		PP_2856	0.12	+0.3
3,258,911	-		PP_2856	0.12	-0.3
3,258,911	-		PP_2856	0.12	-1.6
3,258,911	-		PP_2856	0.12	-0.8
3,258,925	-		PP_2856	0.13	-0.8