Strain Fitness in Pseudomonas putida KT2440 around PP_2832

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
3,232,120	-		PP_2831	0.58	-0.4
3,232,120	-		PP_2831	0.58	+0.7
3,232,254	+		PP_2831	0.69	+2.4
3,232,254	+		PP_2831	0.69	-0.6
3,232,481	-				+0.7
3,232,602	+				+1.5
3,232,615	-				-1.3
3,232,674	-				-0.2
3,232,696	+				+2.8
3,232,703	+				-0.0
3,232,704	-				+0.2
3,232,704	-				-1.6
3,232,753	+				+2.5
3,232,753	+				-1.8
3,232,753	+				+1.1
3,232,753	+				-0.3
3,232,753	+				+0.8
3,232,753	+				+0.0
3,232,753	+				+0.1
3,232,754	-				-1.8
3,232,754	-				-0.8
3,232,754	-				+1.5
3,232,754	-				-1.2
3,232,754	-				-0.6
3,232,754	-				-0.2
3,232,776	+				-0.4
3,232,810	+				+0.0
3,232,812	+				+0.4
3,232,976	+		PP_2832	0.17	+3.9
3,232,977	-		PP_2832	0.17	-2.1
3,233,003	+		PP_2832	0.20	+3.3
3,233,232	+		PP_2832	0.44	+1.0
3,233,232	+		PP_2832	0.44	+1.3
3,233,232	+		PP_2832	0.44	+1.3
3,233,232	+		PP_2832	0.44	+1.8
3,233,232	+		PP_2832	0.44	+0.8
3,233,233	-		PP_2832	0.44	+1.3
3,233,291	+		PP_2832	0.50	-0.2
3,233,296	-		PP_2832	0.51	-1.2
3,233,344	-		PP_2832	0.56	+2.1
3,233,378	+		PP_2832	0.60	-0.4
3,233,379	-		PP_2832	0.60	-0.5
3,233,379	-		PP_2832	0.60	+0.8
3,233,623	+		PP_2832	0.85	+0.6
3,233,624	-		PP_2832	0.86	-1.6
3,233,624	-		PP_2832	0.86	-1.1
3,233,731	-				-1.7
3,233,744	-				+1.4
3,233,744	-				-0.6
3,233,758	+				+0.4
3,233,862	-				-0.2
3,234,013	+		PP_2833	0.23	-0.3
3,234,013	+		PP_2833	0.23	-2.9
3,234,014	-		PP_2833	0.23	+0.5
3,234,014	-		PP_2833	0.23	-0.6
3,234,140	+		PP_2833	0.36	-0.2
3,234,140	+		PP_2833	0.36	+0.8
3,234,141	-		PP_2833	0.36	+0.8
3,234,183	-		PP_2833	0.41	-0.1
3,234,183	-		PP_2833	0.41	+0.8
3,234,183	-		PP_2833	0.41	+0.5
3,234,369	+		PP_2833	0.60	-0.4
3,234,423	+		PP_2833	0.65	+0.8
3,234,637	+		PP_2833	0.87	-1.4
3,234,637	+		PP_2833	0.87	-0.6