Strain Fitness in Pseudomonas putida KT2440 around PP_2791

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
3,179,820	-		PP_2790	0.56	-0.2
3,179,820	-		PP_2790	0.56	+0.8
3,179,820	-		PP_2790	0.56	+1.1
3,180,035	-		PP_2790	0.67	-0.1
3,180,336	+		PP_2790	0.83	+2.7
3,180,337	-		PP_2790	0.83	+1.5
3,180,390	-		PP_2790	0.85	+0.9
3,180,522	-				-0.7
3,180,556	+				-0.5
3,180,562	+				+0.3
3,180,717	+				+0.4
3,180,717	+				+0.7
3,180,718	-				+2.3
3,180,783	+				+0.9
3,180,911	+				+0.0
3,180,912	-				-3.9
3,181,088	-		PP_2791	0.25	-0.9
3,181,165	-		PP_2791	0.32	-1.0
3,181,165	-		PP_2791	0.32	-0.2
3,181,248	+				+0.7
3,181,248	+		PP_2791	0.39	-2.1
3,181,249	-		PP_2791	0.39	+0.1
3,181,249	-		PP_2791	0.39	-0.9
3,181,560	+		PP_2791	0.67	-0.3
3,181,771	-		PP_2791	0.85	-2.7
3,181,861	+				+1.1
3,181,861	+				-1.4
3,181,862	-				+0.3
3,182,318	+				-0.1
3,182,617	-		PP_2793	0.24	+1.0