Strain Fitness in Pseudomonas putida KT2440 around PP_2497

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
2,845,064	-		PP_2496	0.33	+0.2
2,845,064	-		PP_2496	0.33	-1.0
2,845,268	-		PP_2496	0.53	-1.6
2,845,268	-		PP_2496	0.53	-3.4
2,845,268	-		PP_2496	0.53	+0.0
2,845,268	-		PP_2496	0.53	-0.1
2,845,578	-		PP_2496	0.83	-0.5
2,845,660	+				+0.8
2,845,661	-				+1.7
2,845,760	+				-1.0
2,845,760	+				+0.6
2,845,760	+				-0.9
2,845,760	+				+1.6
2,845,761	-				+0.9
2,845,761	-				+0.0
2,845,819	+		PP_2497	0.10	+1.1
2,845,819	+		PP_2497	0.10	+0.9
2,846,150	+				+1.6
2,846,151	-				+0.2
2,846,151	-				+0.2
2,846,151	-				+0.7
2,846,194	+				+4.0
2,846,195	-				-1.1
2,846,196	+				-0.2
2,846,214	+				+1.9
2,846,214	+				-1.1
2,846,215	-				+0.3
2,846,215	-				-0.2
2,846,220	+				+0.1
2,846,220	+				-2.4
2,846,412	-				+1.9
2,846,412	-		PP_2498	0.37	-0.7
2,846,437	-		PP_2498	0.48	+0.4
2,846,443	+		PP_2498	0.50	-1.7
2,846,443	+		PP_2498	0.50	-0.5
2,846,444	-		PP_2498	0.50	+1.4
2,846,444	-		PP_2498	0.50	-0.3
2,846,444	-		PP_2498	0.50	-0.1
2,846,464	+		PP_2498	0.59	-0.7
2,846,465	-		PP_2498	0.59	+0.3
2,846,465	-		PP_2498	0.59	-2.5
2,846,474	+		PP_2498	0.63	+0.2
2,846,475	-		PP_2498	0.63	+0.0
2,846,563	+				-0.1
2,846,563	+				+3.6
2,846,618	+				-0.9
2,846,618	+				-1.8
2,846,700	-				+0.2
2,846,915	-		PP_2499	0.82	+1.2
2,846,915	-		PP_2499	0.82	+2.3
2,846,944	-				-3.0
2,847,096	-		PP_2500	0.50	+3.2
2,847,096	-		PP_2500	0.50	+1.0