Strain Fitness in Pseudomonas putida KT2440 around PP_2432

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
2,778,572	-		PP_2431	0.15	-1.3
2,778,651	+		PP_2431	0.23	+0.8
2,778,651	+		PP_2431	0.23	+0.8
2,778,652	-		PP_2431	0.24	+1.4
2,778,652	-		PP_2431	0.24	-0.1
2,778,652	-		PP_2431	0.24	+0.9
2,778,658	+		PP_2431	0.24	+2.8
2,778,658	+		PP_2431	0.24	-0.1
2,778,659	-		PP_2431	0.24	+0.8
2,778,759	+		PP_2431	0.35	+0.8
2,778,760	-		PP_2431	0.35	-0.9
2,778,780	+		PP_2431	0.37	+1.2
2,778,780	+		PP_2431	0.37	+0.2
2,778,780	+		PP_2431	0.37	+0.8
2,778,781	-		PP_2431	0.38	+0.8
2,778,781	-		PP_2431	0.38	-0.4
2,778,781	-		PP_2431	0.38	-1.2
2,778,781	-		PP_2431	0.38	-2.5
2,778,900	+		PP_2431	0.50	+1.2
2,778,900	+		PP_2431	0.50	+0.6
2,778,901	-				-0.8
2,778,925	-		PP_2431	0.53	+0.8
2,779,070	+		PP_2431	0.69	+1.6
2,779,094	-		PP_2431	0.71	+0.4
2,779,094	-		PP_2431	0.71	-0.1
2,779,165	-		PP_2431	0.79	-0.6
2,779,220	+		PP_2431	0.85	-2.9
2,779,221	-		PP_2431	0.85	-1.0
2,779,221	-		PP_2431	0.85	-0.6
2,779,221	-		PP_2431	0.85	+1.0
2,779,221	-		PP_2431	0.85	-1.5
2,779,384	+				+0.5
2,779,384	+				-2.3
2,779,419	+				-1.2
2,779,419	+				+1.8
2,779,471	+				-1.3
2,779,491	+				+0.8
2,779,492	-				+1.7
2,779,507	-				+0.4
2,779,669	-		PP_2432	0.32	+0.9
2,779,830	+		PP_2432	0.56	+1.3
2,779,830	+		PP_2432	0.56	+1.1
2,779,831	-		PP_2432	0.57	+0.4
2,779,891	-		PP_2432	0.66	+0.7
2,779,905	-		PP_2432	0.68	+0.0
2,779,905	-		PP_2432	0.68	+0.7
2,780,287	+		PP_2433	0.12	+0.8
2,780,396	+		PP_2433	0.35	-1.5
2,780,396	+		PP_2433	0.35	-5.2
2,780,727	+				-0.0
2,780,728	-				-1.3
2,780,761	+		PP_2434	0.13	-1.9
2,780,762	-		PP_2434	0.13	+1.2
2,780,762	-		PP_2434	0.13	+1.4
2,780,762	-		PP_2434	0.13	+1.0
2,780,799	+		PP_2434	0.22	+0.9
2,780,799	+		PP_2434	0.22	-1.1
2,780,800	-		PP_2434	0.22	+1.0
2,780,800	-		PP_2434	0.22	-1.2
2,780,800	-		PP_2434	0.22	-0.4
2,780,874	-		PP_2434	0.39	+2.4
2,781,057	+		PP_2434	0.81	+0.1
2,781,057	+		PP_2434	0.81	+0.8
2,781,057	+		PP_2434	0.81	+0.2
2,781,057	+		PP_2434	0.81	+1.9