Strain Fitness in Pseudomonas putida KT2440 around PP_2363

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
2,695,216	+		PP_2362	0.63	+0.3
2,695,216	+		PP_2362	0.63	-0.7
2,695,249	+		PP_2362	0.64	+0.3
2,695,249	+		PP_2362	0.64	+0.8
2,695,249	+		PP_2362	0.64	-1.5
2,695,250	-		PP_2362	0.64	-0.2
2,695,250	-		PP_2362	0.64	+1.4
2,695,250	-		PP_2362	0.64	-0.1
2,695,387	+		PP_2362	0.70	+1.1
2,695,388	-		PP_2362	0.70	+0.1
2,695,436	-		PP_2362	0.72	-1.3
2,695,519	+		PP_2362	0.76	+1.9
2,695,519	+		PP_2362	0.76	+1.9
2,695,519	+		PP_2362	0.76	-1.3
2,695,519	+		PP_2362	0.76	-2.2
2,695,519	+		PP_2362	0.76	+3.4
2,695,520	-		PP_2362	0.76	-1.4
2,695,520	-		PP_2362	0.76	+0.2
2,695,520	-		PP_2362	0.76	-3.2
2,695,520	-		PP_2362	0.76	+0.7
2,695,520	-		PP_2362	0.76	-0.7
2,695,520	-		PP_2362	0.76	-1.1
2,695,717	+		PP_2362	0.84	-0.8
2,695,718	-		PP_2362	0.84	+0.3
2,695,729	+		PP_2362	0.84	-1.5
2,695,729	+		PP_2362	0.84	-0.7
2,695,730	-		PP_2362	0.84	+0.4
2,695,730	-		PP_2362	0.84	+3.1
2,695,730	-		PP_2362	0.84	+1.1
2,695,730	-		PP_2362	0.84	-2.7
2,695,730	-		PP_2362	0.84	-0.0
2,695,730	-		PP_2362	0.84	+0.8
2,695,732	+		PP_2362	0.84	-3.7
2,695,745	-		PP_2362	0.85	+0.8
2,695,972	+				+1.3
2,695,973	-				+0.8
2,696,210	+		PP_2363	0.11	-1.4
2,696,236	+		PP_2363	0.14	-0.2
2,696,385	+		PP_2363	0.29	+3.5
2,696,385	+		PP_2363	0.29	+0.8
2,696,431	-		PP_2363	0.34	+1.2
2,696,480	+		PP_2363	0.39	+1.4
2,696,505	+		PP_2363	0.42	-0.7
2,696,505	+		PP_2363	0.42	-0.3
2,696,505	+		PP_2363	0.42	-1.1
2,696,506	-		PP_2363	0.42	-0.8
2,696,506	-		PP_2363	0.42	+0.3
2,696,506	-		PP_2363	0.42	+0.1
2,696,506	-		PP_2363	0.42	+3.1
2,696,506	-		PP_2363	0.42	+1.7
2,696,506	-		PP_2363	0.42	+1.4
2,696,506	-		PP_2363	0.42	-0.6
2,696,506	-		PP_2363	0.42	+1.5
2,696,508	-		PP_2363	0.42	+0.6
2,696,508	-		PP_2363	0.42	-1.7
2,696,547	+		PP_2363	0.46	+0.9
2,696,547	+		PP_2363	0.46	-0.4
2,696,547	+		PP_2363	0.46	+1.5
2,696,548	-		PP_2363	0.46	+1.4
2,696,583	+		PP_2363	0.50	+0.2
2,696,584	-		PP_2363	0.50	+0.6
2,696,584	-		PP_2363	0.50	+2.7
2,696,611	+		PP_2363	0.53	+2.3
2,696,755	+		PP_2363	0.67	-1.0
2,696,755	+		PP_2363	0.67	+0.0
2,696,755	+		PP_2363	0.67	-0.2
2,696,791	+		PP_2363	0.71	-0.2
2,696,791	+		PP_2363	0.71	+1.9
2,696,857	-		PP_2363	0.78	-1.6
2,696,857	-		PP_2363	0.78	+0.6
2,696,857	-		PP_2363	0.78	-0.3
2,696,857	-		PP_2363	0.78	+0.1
2,696,857	-		PP_2363	0.78	+0.8
2,696,865	+		PP_2363	0.79	+0.7
2,696,865	+		PP_2363	0.79	+1.4
2,696,866	-		PP_2363	0.79	-0.7
2,696,866	-		PP_2363	0.79	-0.2
2,696,866	-		PP_2363	0.79	+1.1
2,696,956	+		PP_2363	0.88	+2.0
2,696,956	+		PP_2363	0.88	+0.5
2,696,956	+		PP_2363	0.88	+0.1
2,696,957	-		PP_2363	0.88	+1.4
2,696,988	+				+3.4
2,696,988	+				+0.9
2,696,989	-				-0.5
2,696,989	-				+0.1
2,696,989	-				+1.6
2,696,990	+				+1.7
2,696,990	+				+0.6
2,696,991	-				+0.7
2,697,003	+				+0.1
2,697,003	+				-0.3
2,697,004	-				+3.8
2,697,004	-				+1.0
2,697,036	+				+0.2
2,697,357	+		PP_2364	0.18	+0.5
2,697,359	+		PP_2364	0.18	-0.7
2,697,359	+		PP_2364	0.18	-0.5
2,697,359	+		PP_2364	0.18	+3.5
2,697,360	-		PP_2364	0.18	-0.4
2,697,360	-		PP_2364	0.18	-0.2
2,697,406	-		PP_2364	0.22	+0.8
2,697,527	+		PP_2364	0.33	+0.5
2,697,527	+		PP_2364	0.33	-1.5
2,697,527	+		PP_2364	0.33	+1.4
2,697,528	-		PP_2364	0.33	+1.4
2,697,528	-		PP_2364	0.33	-0.5
2,697,950	+		PP_2364	0.70	-0.2
2,698,003	-		PP_2364	0.74	-1.0
2,698,047	-		PP_2364	0.78	-2.7