Strain Fitness in Pseudomonas putida KT2440 around PP_2173

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
2,478,268	+				-0.5
2,478,268	+				-0.7
2,478,269	-				+0.2
2,478,375	+		PP_2172	0.16	+2.9
2,478,375	+		PP_2172	0.16	-0.9
2,478,495	+		PP_2172	0.43	-0.5
2,478,495	+		PP_2172	0.43	-2.2
2,478,495	+		PP_2172	0.43	+0.1
2,478,571	+		PP_2172	0.60	+1.5
2,478,572	-		PP_2172	0.60	+0.5
2,478,776	+				+0.6
2,478,777	-				+1.8
2,478,929	-				-1.7
2,478,929	-				+0.6
2,478,948	+				+0.8
2,478,948	+				+1.8
2,478,948	+				+1.0
2,478,948	+				-0.6
2,478,948	+				-1.4
2,478,949	-				+1.1
2,478,949	-				+1.8
2,478,949	-				-0.5
2,478,980	+				-0.7
2,479,034	+				+0.3
2,479,034	+				+1.8
2,479,034	+				-0.2
2,479,034	+				-0.9
2,479,035	-				-0.8
2,479,035	-				-0.2
2,479,035	-				+4.2
2,479,042	+				-0.8
2,479,042	+				+0.1
2,479,043	-				+0.4
2,479,043	-				+3.1
2,479,082	-				-2.3
2,479,110	+				+0.5
2,479,110	+				+0.7
2,479,111	-				+0.7
2,479,111	-				+2.6
2,479,114	+				-0.7
2,479,114	+				+1.2
2,479,114	+				+0.1
2,479,114	+				-0.0
2,479,115	-				-0.9
2,479,115	-				+0.1
2,479,115	-				-1.0
2,479,115	-				-1.0
2,479,115	-				-1.2
2,479,193	+				+0.1
2,479,193	+				-1.0
2,479,208	+				+0.8
2,479,208	+				+1.8
2,479,208	+				-1.2
2,479,208	+				+1.8
2,479,208	+				-0.4
2,479,209	-				-0.6
2,479,209	-				+0.7
2,479,247	+				-1.1
2,479,248	-				+1.6
2,479,248	-				+0.4
2,479,320	-		PP_2173	0.15	+4.5
2,479,320	-		PP_2173	0.15	-0.8
2,479,332	+		PP_2173	0.16	-0.2
2,479,333	-		PP_2173	0.16	-0.7
2,479,333	-		PP_2173	0.16	-2.0
2,479,347	-		PP_2173	0.18	+0.0
2,479,347	-		PP_2173	0.18	-0.4
2,479,394	-		PP_2173	0.23	+1.0
2,479,396	-		PP_2173	0.23	-0.9
2,479,396	-		PP_2173	0.23	-2.9
2,479,442	-		PP_2173	0.29	-0.7
2,479,515	+		PP_2173	0.37	-0.0
2,479,516	-		PP_2173	0.37	-1.5
2,479,666	-		PP_2173	0.54	-3.2
2,479,694	-		PP_2173	0.58	-0.8
2,479,907	+		PP_2173	0.82	+1.0
2,480,003	+				-0.1
2,480,004	-				-0.6
2,480,033	+				-1.3
2,480,033	+				-0.4
2,480,034	-				+0.8
2,480,034	-				+0.8
2,480,037	+				+0.2
2,480,037	+				-1.8
2,480,037	+				-0.9
2,480,038	-				+0.4
2,480,038	-				-0.9
2,480,038	-				-1.3
2,480,094	+				-0.7
2,480,139	+				+1.2
2,480,169	+				+0.1
2,480,194	-				-0.5
2,480,194	-				+0.8
2,480,252	-		PP_2174	0.21	-0.5
2,480,399	+		PP_2174	0.59	-1.7
2,480,400	-		PP_2174	0.59	-0.1
2,480,507	+		PP_2174	0.86	-2.2
2,480,507	+		PP_2174	0.86	+0.2
2,480,507	+		PP_2174	0.86	-0.1
2,480,507	+				-0.2
2,480,508	-		PP_2174	0.87	+2.4
2,480,508	-		PP_2174	0.87	-2.0
2,480,508	-		PP_2174	0.87	-0.9
2,480,508	-		PP_2174	0.87	+0.1
2,480,508	-		PP_2174	0.87	-0.7
2,480,514	+		PP_2174	0.88	+0.8
2,480,514	+		PP_2174	0.88	+1.5
2,480,515	-		PP_2174	0.88	+1.9
2,480,547	+				-1.2
2,480,547	+				+1.2
2,480,548	-				+1.4
2,480,694	+				+0.1
2,480,694	+				-2.0
2,480,694	+				+0.5
2,480,695	-				-0.4
2,480,695	-				-1.5
2,480,755	-		PP_2175	0.16	-0.8
2,480,989	-		PP_2175	0.49	+3.6
2,481,030	+		PP_2175	0.55	-1.1
2,481,030	+		PP_2175	0.55	+0.0
2,481,031	-		PP_2175	0.55	+0.8