Strain Fitness in Pseudomonas putida KT2440 around PP_2036

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
2,313,378	+		PP_2035	0.42	+0.2
2,313,378	+		PP_2035	0.42	+1.5
2,313,378	+		PP_2035	0.42	-0.1
2,313,497	+		PP_2035	0.51	-1.5
2,313,498	-		PP_2035	0.51	-0.9
2,313,520	-		PP_2035	0.53	-1.4
2,313,520	-		PP_2035	0.53	+0.5
2,313,585	+		PP_2035	0.59	-0.7
2,313,585	+		PP_2035	0.59	+3.8
2,313,585	+		PP_2035	0.59	+1.5
2,313,585	+		PP_2035	0.59	-0.5
2,313,586	-		PP_2035	0.59	+2.0
2,313,586	-		PP_2035	0.59	-1.1
2,313,586	-		PP_2035	0.59	-1.2
2,313,586	-		PP_2035	0.59	+1.0
2,313,701	+		PP_2035	0.68	-0.2
2,313,769	-		PP_2035	0.74	-1.9
2,313,776	+		PP_2035	0.74	+0.7
2,313,776	+		PP_2035	0.74	+0.3
2,313,777	-		PP_2035	0.74	+3.0
2,313,790	-				-2.0
2,313,790	-		PP_2035	0.75	+0.9
2,313,867	+		PP_2035	0.82	+0.8
2,313,867	+		PP_2035	0.82	-1.2
2,313,867	+		PP_2035	0.82	-0.8
2,313,993	+				+4.1
2,314,101	-				-3.0
2,314,139	+				-3.3
2,314,140	-				+0.8
2,314,410	-		PP_2036	0.19	+2.3
2,314,447	+		PP_2036	0.24	+0.7
2,314,448	-		PP_2036	0.24	-2.5
2,314,559	+		PP_2036	0.36	-0.8
2,314,716	-		PP_2036	0.54	+0.9
2,314,757	+		PP_2036	0.59	+3.6
2,314,757	+		PP_2036	0.59	+1.3
2,314,758	-		PP_2036	0.59	+2.2
2,314,758	-		PP_2036	0.59	+1.1
2,314,758	-		PP_2036	0.59	+1.3
2,314,822	-		PP_2036	0.66	+1.1
2,314,964	+		PP_2036	0.82	+0.2
2,314,965	-		PP_2036	0.82	-2.2
2,314,965	-		PP_2036	0.82	+1.8
2,315,025	+		PP_2036	0.89	-0.3
2,315,025	+		PP_2036	0.89	-2.8
2,315,118	+				+1.8
2,315,119	-				-1.2
2,315,158	+				+2.1
2,315,159	-				-0.3
2,315,212	+				+3.1
2,315,213	-				+1.8
2,315,215	+				-0.3
2,315,216	-				+0.8
2,315,755	+		PP_2037	0.75	-0.4
2,315,755	+		PP_2037	0.75	+1.8
2,315,756	-		PP_2037	0.75	-0.9
2,315,756	-		PP_2037	0.75	-0.4
2,315,758	+		PP_2037	0.75	-1.9
2,315,758	+		PP_2037	0.75	-0.4
2,315,758	+		PP_2037	0.75	+0.2
2,315,758	+		PP_2037	0.75	-0.4
2,315,758	+		PP_2037	0.75	-0.7
2,315,759	-		PP_2037	0.75	-0.0
2,315,759	-		PP_2037	0.75	-1.3
2,315,759	-		PP_2037	0.75	+0.3
2,315,759	-		PP_2037	0.75	-0.0
2,315,759	-		PP_2037	0.75	-1.1
2,315,759	-		PP_2037	0.75	+0.5
2,315,832	-		PP_2037	0.85	-1.8
2,315,951	+				+0.3
2,315,952	-				-2.9
2,316,108	+				+1.2
2,316,109	-				+0.5
2,316,119	+				+1.7
2,316,119	+				+1.0
2,316,120	-				-2.5