Strain Fitness in Pseudomonas putida KT2440 around PP_1541

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
1,742,334	+		PP_1539	0.39	-0.2
1,742,402	+		PP_1539	0.47	-0.3
1,742,402	+		PP_1539	0.47	-1.2
1,742,402	+		PP_1539	0.47	-2.7
1,742,403	-		PP_1539	0.47	-0.8
1,742,403	-		PP_1539	0.47	+2.4
1,742,403	-		PP_1539	0.47	+2.0
1,742,403	-		PP_1539	0.47	+1.7
1,742,418	+		PP_1539	0.49	-0.2
1,742,418	+		PP_1539	0.49	+0.2
1,742,432	-		PP_1539	0.50	-3.3
1,742,468	+		PP_1539	0.54	-2.5
1,742,469	-		PP_1539	0.55	-2.8
1,742,469	-		PP_1539	0.55	-2.1
1,742,587	-		PP_1539	0.68	-0.9
1,742,635	-		PP_1539	0.74	-0.9
1,742,708	+		PP_1539	0.82	-0.3
1,742,756	+		PP_1539	0.88	+1.2
1,742,756	+		PP_1539	0.88	-1.8
1,742,756	+		PP_1539	0.88	+1.5
1,742,756	+		PP_1539	0.88	-1.5
1,742,757	-		PP_1539	0.88	-1.7
1,742,757	-		PP_1539	0.88	+2.0
1,742,757	-		PP_1539	0.88	+0.1
1,742,757	-		PP_1539	0.88	+1.2
1,742,757	-		PP_1539	0.88	+1.2
1,742,779	-				+0.9
1,742,805	+				-0.7
1,742,805	+				+0.7
1,742,806	-				-3.1
1,743,155	+				+0.2
1,743,155	+				+1.2
1,743,315	+				+0.2
1,743,727	+		PP_1541	0.47	-2.2
1,743,728	-		PP_1541	0.47	-2.0
1,743,793	+		PP_1541	0.55	-2.8
1,743,793	+		PP_1541	0.55	+1.9
1,743,794	-		PP_1541	0.55	+0.0
1,743,794	-		PP_1541	0.55	+0.2
1,743,819	+		PP_1541	0.57	-0.2
1,743,819	+		PP_1541	0.57	-0.7
1,743,819	+		PP_1541	0.57	+1.8
1,743,820	-		PP_1541	0.57	-0.3
1,743,820	-		PP_1541	0.57	+1.1
1,744,034	-		PP_1541	0.81	+1.5
1,744,034	-				+0.8
1,744,075	+		PP_1541	0.85	+0.9
1,744,075	+		PP_1541	0.85	+0.9
1,744,075	+		PP_1541	0.85	+0.0
1,744,075	+		PP_1541	0.85	+2.5
1,744,076	-		PP_1541	0.85	+1.7
1,744,122	+				+2.8
1,744,181	-				+1.3
1,744,198	+				-1.5
1,744,198	+				-0.8
1,744,199	-				-0.8
1,744,199	-				+1.4
1,744,199	-				+1.6
1,744,201	+				-2.9
1,744,201	+				-0.1
1,744,201	+				-0.6
1,744,202	-				-0.9
1,744,202	-				+2.8
1,744,212	-				+0.7
1,744,246	-				-2.4
1,744,246	-				-0.5
1,744,342	+		PP_1542	0.11	+0.8
1,744,343	-		PP_1542	0.11	+2.8
1,744,362	+		PP_1542	0.14	-0.7
1,744,486	+		PP_1542	0.35	-1.9
1,744,486	+		PP_1542	0.35	-0.5
1,744,486	+		PP_1542	0.35	+4.6
1,744,486	+		PP_1542	0.35	+2.2
1,744,486	+		PP_1542	0.35	-1.7
1,744,486	+		PP_1542	0.35	-1.9
1,744,555	+		PP_1542	0.46	+1.9
1,744,556	-		PP_1542	0.47	-0.7
1,744,576	+		PP_1542	0.50	+0.8
1,744,731	+		PP_1542	0.76	-1.5
1,744,732	-		PP_1542	0.76	+0.1
1,744,732	-		PP_1542	0.76	+4.1
1,744,732	-		PP_1542	0.76	+0.7
1,744,732	-		PP_1542	0.76	+0.1
1,744,757	-		PP_1542	0.80	-0.2
1,744,757	-		PP_1542	0.80	-0.0
1,744,942	+				+0.6
1,744,942	+				+1.2
1,744,942	+				+0.2
1,744,943	-				+0.4
1,744,945	+				-0.8
1,745,035	+				-0.4
1,745,035	+				-0.3
1,745,036	-				-1.8
1,745,036	-				-0.5
1,745,036	-				+0.1
1,745,036	-				-2.1
1,745,036	-				+0.6
1,745,036	-				-0.1
1,745,039	+				+1.8
1,745,039	+				-0.3
1,745,093	+				-0.3
1,745,131	+				+0.9