Strain Fitness in Pseudomonas putida KT2440 around PP_1504

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
1,707,878	-				+0.8
1,707,920	-		PP_1502	0.75	-2.3
1,707,920	-		PP_1502	0.75	+1.2
1,708,102	-				-3.1
1,708,115	+				+0.3
1,708,115	+				-0.7
1,708,115	+				-0.4
1,708,116	-				-0.9
1,708,116	-				+0.2
1,708,116	-				-0.2
1,708,116	-				-0.2
1,708,196	+				+0.2
1,708,197	-				+0.4
1,708,443	+		PP_1503	0.59	+0.8
1,708,444	-		PP_1503	0.59	-1.1
1,708,444	-		PP_1503	0.59	-0.8
1,708,489	+		PP_1503	0.69	+1.0
1,708,490	-		PP_1503	0.69	-0.6
1,708,550	-		PP_1503	0.82	+2.3
1,708,610	-				-1.9
1,708,636	+				+0.6
1,708,726	+				+2.4
1,708,727	-				-0.1
1,708,758	+				+0.3
1,708,758	+				+0.8
1,708,759	-				+0.1
1,708,759	-				-1.5
1,708,931	-		PP_1504	0.20	+1.0
1,708,948	-		PP_1504	0.24	+0.8
1,708,994	+		PP_1504	0.37	+0.5
1,708,994	+		PP_1504	0.37	+1.3
1,708,994	+		PP_1504	0.37	+1.7
1,708,994	+		PP_1504	0.37	+0.3
1,708,994	+		PP_1504	0.37	+0.4
1,708,994	+		PP_1504	0.37	+2.5
1,708,994	+		PP_1504	0.37	-0.2
1,708,995	-				+0.8
1,708,995	-		PP_1504	0.37	+0.6
1,708,995	-		PP_1504	0.37	+1.2
1,708,995	-		PP_1504	0.37	-0.2
1,708,998	+		PP_1504	0.38	-1.1
1,708,998	+		PP_1504	0.38	+1.0
1,708,998	+		PP_1504	0.38	+0.6
1,708,998	+		PP_1504	0.38	-3.0
1,708,998	+		PP_1504	0.38	-0.4
1,708,998	+		PP_1504	0.38	+1.0
1,708,998	+		PP_1504	0.38	+1.8
1,709,076	+		PP_1504	0.58	-1.5
1,709,077	-		PP_1504	0.58	+0.8
1,709,358	-				-0.8
1,709,358	-				-0.2
1,709,358	-				-2.0
1,709,411	-				-2.3
1,709,634	+				-2.8
1,709,690	-		PP_1505	0.12	-0.4
1,709,690	-		PP_1505	0.12	-0.0
1,709,830	-		PP_1505	0.17	+0.8
1,710,178	+		PP_1505	0.30	-3.1
1,710,179	-		PP_1505	0.30	+0.1
1,710,179	-		PP_1505	0.30	+0.5