Strain Fitness in Pseudomonas putida KT2440 around PP_1135

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
1,299,339	+		PP_1134	0.48	+0.0
1,299,339	+		PP_1134	0.48	+0.5
1,299,339	+		PP_1134	0.48	-1.7
1,299,339	+		PP_1134	0.48	-0.8
1,299,340	-		PP_1134	0.48	-0.8
1,299,398	+		PP_1134	0.51	-0.7
1,299,399	-		PP_1134	0.52	-2.9
1,299,399	-		PP_1134	0.52	+0.3
1,299,399	-		PP_1134	0.52	+2.8
1,299,440	+		PP_1134	0.54	+1.3
1,299,440	+		PP_1134	0.54	-0.2
1,299,441	-		PP_1134	0.54	-2.0
1,299,586	-		PP_1134	0.63	+0.6
1,299,586	-		PP_1134	0.63	+4.0
1,299,669	+		PP_1134	0.68	+0.8
1,299,670	-		PP_1134	0.68	-0.9
1,299,922	-		PP_1134	0.84	-0.5
1,300,050	+				+0.2
1,300,050	+				+0.0
1,300,051	-				+1.4
1,300,173	-				+2.4
1,300,234	+				+1.5
1,300,234	+				+0.8
1,300,234	+				-1.5
1,300,235	-				-0.6
1,300,236	+				-3.1
1,300,236	+				-2.4
1,300,237	-				+1.5
1,300,237	-				+0.2
1,300,237	-				-2.4
1,300,237	-				+0.8
1,300,244	+				-1.3
1,300,245	-				+1.0
1,300,265	+				-1.6
1,300,303	+				-0.8
1,300,304	-				-1.6
1,300,304	-				+0.6
1,300,306	+				+1.0
1,300,360	+		PP_1135	0.11	+0.2
1,300,360	+		PP_1135	0.11	+0.8
1,300,360	+		PP_1135	0.11	-1.5
1,300,360	+		PP_1135	0.11	+3.1
1,300,360	+		PP_1135	0.11	-1.2
1,300,361	-		PP_1135	0.11	-1.0
1,300,361	-		PP_1135	0.11	-0.6
1,300,361	-		PP_1135	0.11	+0.8
1,300,361	-		PP_1135	0.11	-1.9
1,300,407	+		PP_1135	0.17	-1.4
1,300,407	+		PP_1135	0.17	+0.5
1,300,407	+		PP_1135	0.17	-2.4
1,300,407	+		PP_1135	0.17	-0.2
1,300,408	-		PP_1135	0.17	-0.1
1,300,408	-		PP_1135	0.17	-0.6
1,300,641	+		PP_1135	0.49	-2.3
1,300,642	-				+0.8
1,300,683	-		PP_1135	0.54	-1.1
1,300,918	-		PP_1135	0.86	-0.7
1,300,947	+		PP_1135	0.90	+0.8
1,301,029	+				+0.2
1,301,029	+				+1.4
1,301,030	-				-2.4
1,301,030	-				+0.5
1,301,046	-				+4.1
1,301,099	+				+2.5
1,301,114	-				-0.2
1,301,119	+				-0.2
1,301,243	+				+0.4
1,301,246	-				+0.8
1,301,331	+				-0.4
1,301,383	-		PP_1136	0.10	-0.7
1,301,396	+		PP_1136	0.11	-2.9
1,301,396	+		PP_1136	0.11	-1.1
1,301,396	+		PP_1136	0.11	+0.7
1,301,397	-		PP_1136	0.11	+1.4
1,301,397	-		PP_1136	0.11	+0.9
1,301,418	+		PP_1136	0.13	-0.4
1,301,418	+		PP_1136	0.13	-0.9
1,301,418	+		PP_1136	0.13	-0.2
1,301,419	-		PP_1136	0.13	+1.6
1,301,419	-		PP_1136	0.13	+4.8
1,301,461	-		PP_1136	0.16	-1.2
1,301,542	+		PP_1136	0.22	+2.4
1,301,596	-		PP_1136	0.26	-1.8
1,301,596	-		PP_1136	0.26	-1.0
1,301,847	+		PP_1136	0.46	+3.4
1,301,847	+		PP_1136	0.46	+3.4
1,301,918	+		PP_1136	0.51	-0.3
1,301,918	+		PP_1136	0.51	-0.5
1,301,919	-		PP_1136	0.51	-0.7
1,301,972	-		PP_1136	0.55	-0.3
1,302,016	+		PP_1136	0.59	+0.4