Strain Fitness in Pseudomonas putida KT2440 around PP_1112

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
1,270,249	-				-2.9
1,270,329	+				+0.8
1,270,363	-				-1.5
1,270,437	-		PP_1111	0.16	-5.7
1,270,544	+		PP_1111	0.29	-4.0
1,270,590	-		PP_1111	0.35	-2.8
1,270,590	-		PP_1111	0.35	+0.8
1,270,661	+		PP_1111	0.44	+0.8
1,270,719	+		PP_1111	0.51	-2.4
1,270,719	+		PP_1111	0.51	-0.2
1,270,775	+		PP_1111	0.58	+0.8
1,270,897	-		PP_1111	0.74	-4.9
1,270,897	-		PP_1111	0.74	-2.3
1,270,935	+		PP_1111	0.79	-2.0
1,270,935	+		PP_1111	0.79	+0.8
1,270,936	-		PP_1111	0.79	-4.9
1,270,936	-		PP_1111	0.79	-2.8
1,270,936	-		PP_1111	0.79	-5.2
1,270,936	-		PP_1111	0.79	-2.8
1,270,983	-		PP_1111	0.85	-1.5
1,270,983	-		PP_1111	0.85	-3.7
1,271,024	+				+0.8
1,271,083	-				-3.7
1,271,083	-				-5.1
1,271,099	-				-0.6
1,271,099	-				+0.8
1,271,099	-				+0.8
1,271,099	-				+0.1
1,271,126	+				+0.0
1,271,127	-				-0.2
1,271,132	+				-1.0
1,271,132	+				-2.3
1,271,133	-				+1.0
1,271,429	+		PP_1112	0.27	-3.6
1,271,429	+		PP_1112	0.27	-0.5
1,271,430	-		PP_1112	0.27	+1.7
1,271,430	-		PP_1112	0.27	+1.7
1,271,430	-		PP_1112	0.27	-0.5
1,271,430	-		PP_1112	0.27	+2.3
1,271,430	-		PP_1112	0.27	-0.1
1,271,554	+		PP_1112	0.38	+0.8
1,271,603	+		PP_1112	0.42	-0.5
1,271,604	-		PP_1112	0.42	-1.8
1,271,924	-		PP_1112	0.68	+0.5
1,271,980	+		PP_1112	0.73	-0.8
1,271,980	+		PP_1112	0.73	+0.1
1,271,980	+		PP_1112	0.73	+0.5
1,271,981	-		PP_1112	0.73	+0.9
1,271,997	-		PP_1112	0.74	+1.4
1,272,050	+		PP_1112	0.78	+0.6
1,272,050	+		PP_1112	0.78	-2.7
1,272,050	+		PP_1112	0.78	-3.2
1,272,050	+		PP_1112	0.78	+0.4
1,272,050	+		PP_1112	0.78	+0.8
1,272,051	-		PP_1112	0.79	+0.3
1,272,051	-		PP_1112	0.79	+1.0
1,272,051	-		PP_1112	0.79	+1.4
1,272,051	-		PP_1112	0.79	+1.1
1,272,051	-		PP_1112	0.79	+1.2
1,272,051	-		PP_1112	0.79	+0.4
1,272,051	-		PP_1112	0.79	+0.9
1,272,055	-		PP_1112	0.79	+1.6
1,272,203	-				+0.9
1,272,298	+				+1.4
1,272,320	+				+2.0
1,272,320	+				+2.3
1,272,320	+				+1.5
1,272,320	+				+1.0
1,272,321	-				+1.0
1,272,321	-				+1.2
1,272,336	+				+2.1
1,272,336	+				+2.5
1,272,340	+				+1.3
1,272,340	+				+2.3
1,272,340	+				+1.0
1,272,341	-				+2.0
1,272,341	-				+2.4
1,272,341	-				+1.5
1,272,372	+				+1.2
1,272,508	+		PP_1113	0.22	+2.2
1,272,679	+		PP_1113	0.41	+1.9
1,272,680	-		PP_1113	0.41	+1.0
1,272,680	-		PP_1113	0.41	+1.6
1,272,680	-		PP_1113	0.41	+1.4
1,272,680	-		PP_1113	0.41	+0.3
1,272,680	-		PP_1113	0.41	+2.4
1,272,680	-		PP_1113	0.41	+1.1
1,272,685	+				+0.2
1,272,685	+		PP_1113	0.42	+2.1
1,272,832	-		PP_1113	0.58	+1.6
1,273,040	-		PP_1113	0.81	+1.5
1,273,065	+		PP_1113	0.84	+3.5
1,273,068	+		PP_1113	0.84	+2.1
1,273,068	+		PP_1113	0.84	+2.5
1,273,069	-		PP_1113	0.84	+1.8
1,273,069	-		PP_1113	0.84	+2.1
1,273,069	-		PP_1113	0.84	+1.8
1,273,120	+				+2.3
1,273,150	+				+2.0
1,273,151	-				+2.6
1,273,151	-				+2.9