Strain Fitness in Pseudomonas putida KT2440 around PP_1017

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
1,159,258	+				+0.4
1,159,258	+				-2.5
1,159,285	+				-0.8
1,159,285	+				-2.1
1,159,286	-				-3.1
1,159,396	+		PP_1016	0.12	-2.6
1,159,396	+		PP_1016	0.12	-1.8
1,159,396	+		PP_1016	0.12	-0.1
1,159,397	-		PP_1016	0.12	-3.2
1,159,402	+		PP_1016	0.13	-2.9
1,159,456	+		PP_1016	0.18	+0.8
1,159,456	+		PP_1016	0.18	-3.0
1,159,457	-		PP_1016	0.19	-2.7
1,159,457	-		PP_1016	0.19	-3.0
1,159,457	-		PP_1016	0.19	-1.2
1,159,480	+		PP_1016	0.21	-3.7
1,159,480	+		PP_1016	0.21	-3.6
1,159,636	+		PP_1016	0.38	-1.3
1,159,636	+		PP_1016	0.38	-3.1
1,159,636	+		PP_1016	0.38	-3.4
1,159,637	-		PP_1016	0.38	-0.7
1,159,642	+		PP_1016	0.39	-2.0
1,159,786	+		PP_1016	0.55	-0.4
1,159,786	+		PP_1016	0.55	-4.0
1,159,787	-		PP_1016	0.55	-1.5
1,159,787	-		PP_1016	0.55	-4.1
1,159,918	+		PP_1016	0.69	+0.8
1,159,919	-		PP_1016	0.69	-3.7
1,160,068	+		PP_1016	0.86	-1.0
1,160,068	+		PP_1016	0.86	-1.2
1,160,068	+		PP_1016	0.86	-0.7
1,160,069	-		PP_1016	0.86	-3.0
1,160,069	-		PP_1016	0.86	+1.8
1,160,069	-		PP_1016	0.86	-1.7
1,160,158	+				-3.9
1,160,158	+				-1.5
1,160,158	+				+1.6
1,160,158	+				-1.2
1,160,194	+				-2.7
1,160,194	+				+1.8
1,160,194	+				-2.0
1,160,194	+				-1.2
1,160,194	+				-1.6
1,160,195	-				-1.2
1,160,195	-				-4.0
1,160,195	-				-2.2
1,160,195	-				-2.4
1,160,270	+				+0.8
1,160,270	+				-2.0
1,160,270	+				-2.7
1,160,370	+		PP_1017	0.21	-1.2
1,160,371	-		PP_1017	0.22	-0.7
1,160,371	-		PP_1017	0.22	-3.6
1,160,406	-				-0.2
1,160,477	+		PP_1017	0.34	-3.4
1,160,478	-		PP_1017	0.34	-2.0
1,160,478	-		PP_1017	0.34	-2.9
1,160,608	+		PP_1017	0.50	-3.6
1,160,642	+		PP_1017	0.54	-1.5
1,160,643	-		PP_1017	0.54	+0.8
1,160,682	-		PP_1017	0.58	-2.3
1,160,682	-		PP_1017	0.58	-2.3
1,160,878	-		PP_1017	0.81	-4.1
1,160,899	+		PP_1017	0.84	-3.2
1,160,922	-		PP_1017	0.87	+0.8
1,160,922	-		PP_1017	0.87	+0.8
1,160,922	-		PP_1017	0.87	+0.8
1,160,975	+				-0.7
1,160,976	-				-2.6
1,160,976	-				-3.3
1,160,994	-				-1.2
1,161,033	-				-2.3
1,161,074	+				-3.7
1,161,075	-				-2.2
1,161,188	-		PP_1018	0.13	-1.7
1,161,303	-		PP_1018	0.23	+0.8
1,161,303	-		PP_1018	0.23	-1.9
1,161,506	+		PP_1018	0.41	-4.3
1,161,506	+		PP_1018	0.41	+0.8
1,161,609	-		PP_1018	0.49	-3.5
1,161,609	-		PP_1018	0.49	-1.2
1,161,707	+		PP_1018	0.58	-3.7
1,161,707	+		PP_1018	0.58	-0.7
1,161,707	+		PP_1018	0.58	-4.5
1,161,707	+		PP_1018	0.58	-3.4
1,161,708	-		PP_1018	0.58	+0.8
1,161,708	-		PP_1018	0.58	-2.9
1,161,708	-		PP_1018	0.58	-1.7
1,161,708	-		PP_1018	0.58	-3.7