Strain Fitness in Pseudomonas putida KT2440 around PP_0986

Experiment: pH 8

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 8
1,123,074	+		PP_0984	0.40	-1.5
1,123,074	+		PP_0984	0.40	-0.1
1,123,075	-		PP_0984	0.41	-1.4
1,123,147	-		PP_0984	0.55	+2.4
1,123,147	-		PP_0984	0.55	-0.5
1,123,152	-		PP_0984	0.56	-1.1
1,123,240	+		PP_0984	0.74	+0.9
1,123,279	-		PP_0984	0.82	-0.7
1,123,288	+		PP_0984	0.84	+0.2
1,123,289	-		PP_0984	0.84	-0.3
1,123,350	+				-1.5
1,123,350	+				+0.4
1,123,351	-				+2.4
1,123,392	+				+5.2
1,123,393	-				-0.0
1,123,393	-				-0.1
1,123,398	-				+1.3
1,123,669	+				-1.5
1,123,669	+				+0.9
1,123,669	+				-1.7
1,123,677	-				-0.1
1,123,702	+				-1.4
1,123,754	+				-3.8
1,123,776	-				-1.5
1,123,776	-				-2.6
1,123,880	+				+2.9
1,123,880	+				+2.1
1,123,962	+				-2.3
1,123,962	+				+0.9
1,123,986	-				+2.4
1,123,986	-				+1.9
1,123,986	-				+0.1
1,123,991	+				+0.9
1,123,991	+				-1.6
1,123,992	-				+0.7
1,124,031	+				-1.0
1,124,034	+				-0.9
1,124,034	+				+1.5
1,124,035	-				-0.7
1,124,035	-				-3.5
1,124,035	-				-2.0
1,124,035	-				-0.6
1,124,137	+		PP_0986	0.10	-2.3
1,124,138	-		PP_0986	0.10	-1.2
1,124,138	-		PP_0986	0.10	-1.3
1,124,138	-		PP_0986	0.10	+0.9
1,124,138	-		PP_0986	0.10	-1.0
1,124,140	-		PP_0986	0.11	-1.6
1,124,140	-		PP_0986	0.11	-2.6
1,124,248	+		PP_0986	0.20	+1.9
1,124,401	+		PP_0986	0.34	-1.5
1,124,401	+		PP_0986	0.34	-2.5
1,124,402	-		PP_0986	0.34	-3.2
1,124,427	+		PP_0986	0.36	-2.5
1,124,427	+		PP_0986	0.36	-0.4
1,124,487	-		PP_0986	0.42	+1.9
1,125,219	+				-1.3
1,125,220	-				+1.1
1,125,282	+				+0.4
1,125,282	+				+0.9
1,125,282	+				-2.2
1,125,283	-				+4.4
1,125,283	-				-1.0
1,125,283	-				+2.2
1,125,283	-				+0.5
1,125,422	+		PP_0987	0.18	+1.7
1,125,422	+		PP_0987	0.18	+0.0
1,125,422	+		PP_0987	0.18	+3.7
1,125,423	-		PP_0987	0.18	-4.2
1,125,423	-		PP_0987	0.18	-1.1
1,125,558	+		PP_0987	0.28	-0.1
1,125,558	+		PP_0987	0.28	+0.2
1,125,559	-		PP_0987	0.28	-0.8
1,125,559	-		PP_0987	0.28	-3.6
1,125,636	+		PP_0987	0.34	+1.4
1,125,637	-		PP_0987	0.34	+2.2
1,125,639	+		PP_0987	0.34	+0.2
1,125,639	+		PP_0987	0.34	-0.8
1,125,639	+		PP_0987	0.34	+0.6
1,125,639	+		PP_0987	0.34	-1.1
1,125,639	+		PP_0987	0.34	-2.7
1,125,640	-		PP_0987	0.34	-1.1
1,125,735	+		PP_0987	0.41	+1.6
1,125,735	+		PP_0987	0.41	-1.1
1,125,807	+		PP_0987	0.46	-0.1
1,125,851	+		PP_0987	0.49	+0.1
1,125,851	+		PP_0987	0.49	+1.9
1,125,851	+		PP_0987	0.49	-0.7
1,125,852	-		PP_0987	0.50	+0.6
1,125,852	-		PP_0987	0.50	-2.5
1,125,852	-		PP_0987	0.50	-0.1
1,125,852	-		PP_0987	0.50	+0.0
1,126,033	-		PP_0987	0.63	-1.2
1,126,116	+		PP_0987	0.69	+1.9
1,126,117	-		PP_0987	0.69	-0.1
1,126,117	-		PP_0987	0.69	-2.2
1,126,117	-		PP_0987	0.69	+0.3